KEGG   Oceanobacillus zhaokaii: CUC15_04200
Entry
CUC15_04200       CDS       T05570                                 
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
  KO
K03215  23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
Organism
ocn  Oceanobacillus zhaokaii
Brite
KEGG Orthology (KO) [BR:ocn00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:ocn03009]
    CUC15_04200
Enzymes [BR:ocn01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.190  23S rRNA (uracil1939-C5)-methyltransferase
     CUC15_04200
Ribosome biogenesis [BR:ocn03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    CUC15_04200
SSDB
Motif
Pfam: tRNA_U5-meth_tr TRAM Methyltransf_31 Met_10 Methyltransf_25 Methyltransf_15 MTS Methyltransf_11 PrmA N6_N4_Mtase Cons_hypoth95 RrnaAD N6_Mtase UPF0020 Methyltransf_23 2-ph_phosp PCMT Methyltransf_12
Other DBs
NCBI-ProteinID: AXI08213
UniProt: A0A345PDY3
Position
836765..838144
AA seq 459 aa
MAKQATPVKKNETITLTFEDLTHEGNGVGKINGYPLFVPNALPGESGTVKVVKANKNFGF
GKLLELTKRSPERVEPTCHVHCGGCQLQHMSYHLQLEMKQNQVKNVMKKVAHLEHVPVHP
IIGMESPLHYRNKVQIPVGEKNGELITGFYQKRSHRILENMDTCSIQDETINAIVPAARE
VANRIGIKAYNEESHRGELRHIMVRKGFATNEVMVVFVTRTDKLTNKEVIISELTEKFPE
IKSIVQNVNDKRTSVILGEKTKVLWGEQYIYDKIGDITFAISAKSFYQVNPVQTKVLYDK
ALEYAKIDSSDIVVDAYCGIGTISLFLAQKAKKVYGVEIVPEAINDAKMNAKLNGIDNAE
FFVGEAEKVMPWWKAQGLSPDVIVVDPPRKGCEPDFLQAMIETEPKRIVYVSCNPSTLAR
DLRILEDGGYETKEVQPVDMFPQTPHVEAVCWLERKLSN
NT seq 1380 nt   +upstreamnt  +downstreamnt
atggcaaaacaagcaacaccagtaaagaaaaacgaaacaattacccttacatttgaggat
ttaactcatgaagggaatggcgttggaaaaattaacggctatcccttatttgtaccgaat
gctctaccaggtgaaagtggaaccgttaaagttgtaaaagcaaataaaaactttggtttt
ggtaaactactcgagttgacaaaacgtagcccggaacgggtggagccaacctgccatgtt
cattgtggtggttgtcagctgcagcatatgagttatcatttacagcttgaaatgaaacaa
aatcaagtgaaaaatgtaatgaagaaagtggcacaccttgagcacgttccggttcatcca
attattgggatggaaagccctcttcattaccgtaataaagtacagattccagttggtgaa
aaaaatggagagctgattactggtttttatcaaaagcgtagccatcgtattcttgagaat
atggacacatgcagtatccaggatgagacgattaatgcgattgtaccggctgcgagagag
gttgccaatcggatcgggattaaggcatataatgaggagagccatcgcggagaattacgt
cacattatggtaagaaaagggtttgcaacaaatgaagttatggtcgtgttcgtaacacgt
acagataaattaacgaataaggaagtcataatcagcgagttgacggaaaaattccctgag
ataaaatcgattgtgcaaaatgtcaatgataagcgcacaagcgtcattttaggggagaag
accaaagtattatggggcgagcaatatatttacgataaaatcggcgatataacatttgct
atctctgcaaaatcgttttatcaggtaaatccggtacagacgaaggtactttatgataaa
gcattagagtacgccaaaatcgatagtagcgatatagttgttgacgcgtattgtggtatt
ggcacgatttcattattcctagcccaaaaagcaaaaaaagtatatggcgttgaaattgta
cccgaagcaattaacgatgcaaaaatgaatgccaaattgaatggcattgataatgctgaa
ttctttgttggtgaagcagaaaaagtaatgccatggtggaaagctcaaggattaagtccc
gatgtcattgtcgtagatcctccaagaaaaggctgtgaaccagacttcctgcaggcgatg
attgaaacggagcctaagcggattgtctacgtttcatgcaatccatcgacgttagcgaga
gatcttagaatccttgaagatggaggatatgagacgaaggaagtgcagccagtggatatg
ttcccgcagactcctcatgttgaggcggtttgttggttggagcggaaattgtctaactaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (18)   
   Pfam (18)   
All databases (27)   

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