KEGG   Afipia carboxidovorans OM4: OCA4_c05290
Entry
OCA4_c05290       CDS       T01967                                 
Name
(GenBank) putative RNA polymerase sigma factor protein
  KO
K03088  RNA polymerase sigma-70 factor, ECF subfamily
Organism
oco  Afipia carboxidovorans OM4
Brite
KEGG Orthology (KO) [BR:oco00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:oco03021]
    OCA4_c05290
Transcription machinery [BR:oco03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     OCA4_c05290
SSDB
Motif
Pfam: Sigma70_r2 Sigma70_ECF Sigma70_r4_2 Sigma70_r4 HTH_23 HTH_1 HTH_3 DUF3122 MarR_2 Dimerisation2-like_dom HTH_IclR
Other DBs
NCBI-ProteinID: AEI01679
Position
complement(554097..554651)
AA seq 184 aa
MTKESDLKALMTAGLEGDSNAHRSLLTALSGHLRSYYKSRLLRSGRTAEEAEDLVQEALI
VIHTQRHTYDPEQPLTPWVYAIARYKLIDHLRRTRTTTANVPLENADNILASDDNAAAES
QFDLSKLLERLPERMRLSLQYVKLEGLSVAEAADRSGMSQSAVKVNVHRGLKILTALITR
ETKA
NT seq 555 nt   +upstreamnt  +downstreamnt
atgacaaaggaatcggacctcaaagcgctcatgacggcaggtctcgaaggcgactccaat
gcgcatcgatcgctgctgacggctttgagcggccatctgcggagctactacaagagcaga
cttttgcgatccggacgcacggccgaggaagccgaagacctcgtgcaggaggccttgatc
gtcatccatacgcaacgtcacacctacgatccggagcagccgctgacgccgtgggtatat
gccattgcccgctacaagcttatcgaccatttgcgacgcactaggaccacgacggcgaac
gtacccttggaaaacgccgacaacatcctggcatcggacgacaatgctgctgcagaaagt
caattcgacctttccaagctcttggaaaggttgccggaacgaatgcgactttcgctccaa
tacgtgaaactcgaaggcttgagcgtggccgaagccgccgatcgtagcgggatgtcgcaa
tccgccgtcaaagtgaacgttcaccgtgggttaaaaatcctcaccgcgttgattacccgg
gagacaaaggcgtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (11)   
   Pfam (11)   
All databases (17)   

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