KEGG   Afipia carboxidovorans OM4: OCA4_pHCG3B01240
Entry
OCA4_pHCG3B01240  CDS       T01967                                 
Symbol
trbD
Name
(GenBank) conjugal transfer protein TrbD
  KO
K20529  type IV secretion system protein TrbD
Organism
oco  Afipia carboxidovorans OM4
Pathway
oco02024  Quorum sensing
Brite
KEGG Orthology (KO) [BR:oco00001]
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    OCA4_pHCG3B01240 (trbD)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:oco02044]
    OCA4_pHCG3B01240 (trbD)
Secretion system [BR:oco02044]
 Type IV secretion system
  Trb secretion system protein
   OCA4_pHCG3B01240 (trbD)
SSDB
Motif
Pfam: VirB3 DUF6343
Other DBs
NCBI-ProteinID: AEI04567
Position
pHCG3B:complement(130500..130799)
AA seq 99 aa
MAEGLSGLHRSRIHRALSRPNLLLGADRELVLVTGLAAVILIFVVLTWFSALLGLAIWSG
IVGLLRMMAKADPMMRQVYLRHIRYRPRYRPTSTPWRKY
NT seq 300 nt   +upstreamnt  +downstreamnt
atggctgagggcttatccggtctgcatcgctcgcgcatccaccgcgcgctgtcgcgtccg
aacctgctgctcggcgccgatcgcgagcttgtcctggtgacggggctcgccgctgtgatc
ctaattttcgtggtgctgacctggttctcagccttgctcggtcttgcgatctggagcggc
atcgtcggcctgctgcggatgatggcaaaggccgacccaatgatgcgtcaggtatatctg
cgccacatccgctatcggccgcgctatcgcccgacctcgacgccctggcgcaaatattga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (9)   

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