KEGG   Oryctolagus cuniculus (rabbit): 100009174
Entry
100009174         CDS       T03373                                 
Name
(RefSeq) collagen alpha-1(XII) chain isoform X1
  KO
K08132  collagen type XII alpha
Organism
ocu  Oryctolagus cuniculus (rabbit)
Pathway
ocu04974  Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:ocu00001]
 09150 Organismal Systems
  09154 Digestive system
   04974 Protein digestion and absorption
    100009174
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:ocu00535]
    100009174
Proteoglycans [BR:ocu00535]
 Extracellular matrix (ECM) proteoglycans
  Others
   100009174
SSDB
Motif
Pfam: fn3 VWA VWA_2 Pur_ac_phosph_N Collagen Interfer-bind DUF4998 VWA_3 Copine Toxin_R_bind_N A2M_BRD
Other DBs
NCBI-GeneID: 100009174
NCBI-ProteinID: XP_051711475
Ensembl: ENSOCUG00000015320
Position
12:93739161..93866345
AA seq 3121 aa
MRIRLPPALAALGAALLLSSIEAEVDPPSDLNFKIIDENTVHMSWARPADPIVGYRITVD
PTTDGPTKEFTLAASTTETLLSDLIPEIEYVVTITSYDEVEESVPVIGQLTIQTGDPTKA
GEKKPGKTEIQKCSVSAWTDLVFLVDGSWSVGRNNFKYILDFIAALVSAFDIGEEKTRVG
VVQYSSDTRTEFNLNQYYQRDELLAAIKRIPYKGGNTMTGDAIDYLVKNTFLESAGARVG
FPKVAIIITDGKSQDEVEIPARELRNIGVEVFSLGIKAADAKELKQIASTPSLNHVFNVA
NFDAIVDIQNEIISQVCSGVDEQLGELVSGEEVVEPPSNLIATEVSSKYIKLSWNPSPSA
VTGYKVLLTPMTTGSRHHALSVGPQTTTLSIRDLSADTEYQISVSAMKGLTSSEPISIME
KTQPMKVQVECSRGVDIKADIVFLVDGSYSIGIANFVKVRAFLEVLAKSFEISPNRVQIS
LVQYSRDPHTEFTLKKFTKVEDIIEAINTFPYRGGSTNTGKAMTYVREKIFVPSKGSRSN
VPKVMILITDGKSSDAFRDPAIKLRNSDVEIFAVGVKDAVRSELEAIASPPAETHVFTVE
DFDAFQRISFELTQSICLRIEQELAAIKKKAYVPPKDLNFSEVTSYSFKTDWSPAGENVF
SYHITYKEASGDDEVTVVEPASSTSVVLHNLKPETLYLVNVTAEYEDGFSIPVSGEETTA
EVKGAPRNLKVTDETTDSFKITWTQAPGKVLRYRIIYRPVAGGESKEVTTPANQRRRTLE
NLTPDTKYEVSVIPEYLSGPGSPLTGNAATEEVRGNPRDLRVSDPTTSSMKLSWSGAPGK
VKQYLVTYTPVAGGETQEVTVRGDSTNTVLRGLKEGTQYALSVTALYASGAGDALFGEGT
TLEERGSPRDLITKDITDTSIGAYWTSAPGMVRGYRVSWKSLYDDVEAGEKNLPGDALHT
MIENLQPETKYKISVFATYSSGEGEPVTGDATTELSQDSKSLKVDEETENTLRVSWKPAP
GKVVNYRVVYRPQGGGRQMVAKVPPTVTSTVLKRLQPQTTYDITVLPIYKTGEGKIRQGS
GTTASRFKSPRNLKTSDPTMSSFRVTWEPAPGEVKGYKVTFHPTGDDRRLGELVVGPYDN
TVVLEELRAGTTYKVNVFGMFDGGESSPLVGQEMTTLSDTTVMPILSSGMECLTRAEADI
VLLVDGSWSIGRANFRTVRSFISRIVEVFDIGPKRVQIALAQYSGDPRTEWQLNAHRDKK
SLLQAVANLPYKGGNTLTGMALNFIRQQNFKTQAGMRPRARKIGVLITDGKSQDDVEAPS
KKLKDEGVELFAIGIKNADEVELKMIATDPDDTHAYNVADFDSLSKIVDDLTINLCNSVK
GPGDLEAPSNLVISERTHRSFRVSWTPPSDSVDRYKVEYYPVSGGKRQEFYVSRLETSTV
LKDLKPETEYVVNVYSVVEDEYSEPLKGTEKTLPVPIVSLNIYDIGPTTMRVQWQPVGGA
TGYTVSYEPVKTTESTKPKEMRVGPTVNDVQLTDLLPSTEYEVTVQAVLHDLTSEPATAR
EMTLPLPRPQDVKLRDVTHSTMSVFWEPVLGKVRKYVVRYQTPEEDVKEVEVDRSRTSTS
LKDLLSQTLYTVSVSAVYDEGESPPVTAQETTRPVPAPTNLRITEVTPESFRGTWDHGAS
DVSLYRITWAPFGSSDKMETILNGDENTLVFENLNPNTLYEVSVTAIYPDESESDDLTGS
ERTLRLIPLTTQAPKSGPRNLQVYNATSNSLTVKWDPASGRVQKYRITYQPSTGEGNEQT
TTIGGRQNSVVLQKLKPDTPYTITVSSLYPDGEGGRMTGRGKTKPLNTVRNLRVYDPSTS
TLNVRWDHAEGNPRQYKLFYAPTAGGSEELVPIPGNTNYAILRNLQPDTPYTITVVPVYN
EGDGGRTSDTARTLVRGLARNVQVYNPTPNSLDVRWDPAPGPVQQYRVVYSPVAGTRPSE
SIVVPGNTRTVHLERLTPDTPYSVDIVALYSDGEGNPSPSQGRTLPRGGPRNLRVFGETT
NSLSVAWDHADGPVQQYRIIYSPTVGDPIDEYTTVPGRRNNVILQPLQSDTPYKITVIAV
YEDGDGGHLTGNGRTVGLLPPQNIHISDEWYTRFRVSWDPSPSPVLGYKIVYKPVGSNEP
MEAFVGEVTSYTLHNLNPSTTYDVNVYAQYDSGLSVPLTDQGTTLYLNVTDLKTYQVGWD
TFCVRWSPHRAATSYRLKLSPADGTRGQEITVRGSETSHCFTGLSPGSDYGVTVFVQTPN
LEGPGVPINEHTTLKPTEAPTEPPTPPPPPTIPPARDVCKGAKADIVFLTDASWSIGDDN
FNKVVKFIFNTVGAFDEISPAGIQVSFVQYSDEVKSEFKLNTYNDKAQALGALQNIRYRG
GNTRTGKALTFIKEKVLTWESGMRKNVPKVLVVVTDGRSQDEVKKAAFVIQQSGFSVFVV
GVADVDYNELANIASKPSERHVFIVDDFESFEKIEDNLITFVCETATSSCPLIYLDGYTS
PGFKMLEAYNLTEKNFASVQGVSLESGSFPSYSAYRLQKNAFVNQPTADLHPNGLPPSYT
IILLFRLLPETPNDPFAIWQITDRDYKPQVGVIADPSSKTLSFFNKDTRGEVQTVTFDTD
EVKTLFYGSFHKVHIVVTSKSVKIYIDCYEIIEKDIKEAGNITTDGFEILGKLLKGEKKS
ATFQIQNFDIVCSPVWTSRDRCCDIPSRRDEVKCPALPNACTCTQDSVGPPGPPGPAGGP
GAKGPRGERGINGAIGPPGPRGDTGPPGPQGPPGPQGPNGLSIPGEQGRQGMKGDAGEPG
LPGRTGTPGLPGPPGPMGPPGDRGFTGKDGAMGPRGPPGPPGSPGSPGVTGPSGKPGKPG
DHGRPGPSGLKGEKGDRGDIASQNMMRAVARQVCEQMISGQMSRFNQMLNQIPNDYHSNR
NQPGPPGPPGPPGSAGARGEPGPGGRPGFPGTPGMQGPPGERGLPGEKGERGNGSPGPRG
LPGPPGPQGESRTGPPGSTGSRGPPGPPGRPGNSGIRGPPGPPGYCDSSQCASIPYNGQG
YPEPYVPEGGAYLPEREPFIVPVEPERTAEYEDYGADEPAEEQPPHARWRRALPRGPGQR
P
NT seq 9366 nt   +upstreamnt  +downstreamnt
atgcggatcaggcttcccccagcgctggccgccctgggcgcggccctgctcctgtcttcc
attgaggcagaagttgatccaccttcagacttgaattttaaaattatagatgaaaatact
gtgcatatgtcatgggcaagaccagctgatccaattgtgggttacagaataacagtggac
cctacaacagatgggcccactaaagaatttacccttgcagctagtaccactgaaacttta
ttatcagatcttatacctgaaatagagtatgtggtgacaataacttcatatgatgaagtg
gaagaaagtgtgccagttataggccaactaacaattcaaacaggtgatccgacaaaggca
ggggagaagaaacctggaaaaacagagatacaaaaatgctccgttagtgcctggactgat
ttagttttccttgtggatggctcgtggagtgtgggaagaaataatttcaagtatatctta
gactttattgctgctcttgtgtctgcttttgacattggggaagagaagacaagggttgga
gttgttcagtacagctctgataccaggactgaatttaatttaaaccagtactaccaaagg
gatgaacttcttgctgcaattaaaagaattccatataaaggtggcaacacaatgacaggg
gatgccattgattacttagtcaaaaacactttcttggagtctgctggagcaagagttggc
tttcctaaagtggcaatcataatcacggatggcaaatctcaggatgaggtggaaattcca
gcaagagagcttcgtaatattggagttgaagttttctccttgggtattaaagctgcagat
gcaaaagaactcaaacaaattgcctccacaccttcactgaaccatgttttcaatgtagcc
aattttgatgcaattgtggatattcagaatgagatcatctcccaggtgtgctcaggtgtt
gatgaacaacttggtgaattggttagtggagaagaagttgttgagcctccttcaaatttg
attgccacggaagtctcatcaaaatacattaagctaagttggaatccatctcccagtgca
gtgactggctataaagttctcctcacgccaatgaccacaggaagccgacaccacgctctg
agcgtagggcctcagacaaccacgctcagtattcgcgacctctccgcagacacagagtac
cagatcagtgtttccgccatgaaaggattgacatccagcgaacccatttcaataatggag
aagactcagccaatgaaagttcaagtggaatgctcacgtggtgtggatataaaagctgat
attgtgtttttggttgatggctcctatagtattgggattgcaaactttgttaaagtgagg
gcctttttggaagttctcgcaaaaagttttgaaatttcaccaaatagagtacagataagt
cttgttcaatatagcagagatcctcatactgagttcactttgaagaaatttaccaaggtt
gaagatataattgaagcaataaacaccttcccctacagaggaggctctacgaacactggc
aaagcaatgacttacgtcagagaaaaaatatttgtgcctagcaaaggttcaagaagcaat
gtacccaaagtcatgattcttatcactgatggaaaatcatcggatgctttcagagatcct
gctataaaactaaggaattcagatgtcgaaatctttgctgttggtgtgaaggatgctgtt
cgctcagagttggaagctattgcctctcctcctgccgagacccacgtgttcacagtggag
gattttgatgcttttcagaggatatcttttgaactcacacagtctatctgtcttaggatt
gagcaagaattggcagctataaagaaaaaagcttatgtgcctccaaaggatcttaatttt
tctgaggtgacttcttacagtttcaaaactgactggtctcctgctggagaaaatgttttc
tcgtatcatatcacctacaaggaagcttctggggatgacgaggtcacagtggtggagcca
gcatccagcaccagtgtcgttctgcacaacctgaagccagagaccctgtacttagtcaat
gtgacagcggagtatgaggatggcttcagcattcctgtatctggagaggagaccactgca
gaagtaaagggagcccctcgaaacctgaaagtgacagatgagacaacagacagttttaaa
atcacctggactcaagctccagggaaagttttaaggtatcggattatatatagaccagtt
gctggtggagaaagcaaagaagttaccacccctgccaatcagaggagaagaacattggag
aacctgactccagacacaaaatatgaagtatctgtaattcctgaatatttatcaggacct
ggctctccactgactggaaatgcagccaccgaagaagttagagggaatccaagagactta
agagtttccgaccctacaacatcaagtatgaaattatcttggagtggagcaccaggaaaa
gtgaaacagtatctggtcacatacactccggtggcaggaggtgaaactcaagaggtcact
gtgaggggagattcaaccaatactgtcctgagaggattaaaagaagggacacaatatgcc
ttatctgtgacagccttgtatgcatctggggctggagatgctctttttggagaaggaaca
acacttgaagaacgtggttcacctcgagatttaattactaaagatatcactgacacttca
attggggcttattggacatctgccccaggaatggttcgtggttacagagtctcgtggaaa
tcactttatgatgatgttgaagctggagagaaaaatcttcctggagatgcacttcatacc
atgatagaaaatctgcagcctgagaccaaatacaaaatttcagtttttgcaacttacagc
agtggagaaggtgaacctgttactggagatgccacaaccgaattatcccaagactccaaa
tccttgaaagtagatgaagaaacagaaaatacattgagagtgtcatggaaaccagcacct
ggaaaagttgttaactaccgtgttgtgtatcgtccccaagggggagggaggcaaatggtt
gccaaagtgccacccacagtcacttcaacagtgttaaagcgacttcagccccagaccaca
tatgacatcacagttctcccaatttacaagactggtgaaggaaagattaggcagggatca
ggaacaacagcttctcgatttaaatcacccagaaacctcaaaacatctgacccaaccatg
tcaagcttccgagtgacttgggagcctgcccctggggaagtgaaaggttacaaagtcaca
ttccacccaactggggatgacagaagactgggggagttagtggttggaccatatgacaac
acagttgttttggaagaacttagggcaggtaccacctataaagtaaatgtttttggaatg
tttgatggaggagaaagttcaccactcgttggacaagaaatgaccaccctttctgacaca
actgtaatgccaattttatcctctgggatggagtgtctcacccgagctgaagcagacatt
gtgttgctggtggacgggtcttggagcatcggccgggcaaatttcagaaccgtgagaagt
ttcatttctcgcatcgtggaagtctttgatattggccccaaaagagtacagattgccctc
gctcagtacagtggggaccccagaacagagtggcagttaaatgctcaccgagacaagaag
agcttacttcaagctgtggcaaacttaccctacaaaggaggcaatactctcacaggcatg
gctttgaatttcattcgccaacagaacttcaaaacccaagctggcatgaggcctcgtgct
cgcaagattggtgttctcattactgatggaaaatcacaggatgatgtagaggcaccttca
aagaaacttaaggatgaaggcgtggagctgtttgctattggtattaaaaatgcagatgaa
gttgaattaaagatgattgccactgacccggatgatacacatgcatacaatgtggcagat
tttgattcactgtccaagattgtggatgacctcaccattaatttgtgcaacagtgtcaaa
ggtccaggtgacttggaagcaccttccaatttggttatatccgagcgaacccatcgttct
tttagagtgagctggacacccccttctgacagtgtggatagatacaaggtggaatactat
ccagtttctggagggaaacgccaggaattttatgtgagccgcctggaaactagcacagtg
ctgaaagatctgaagcctgaaactgagtatgttgtaaatgtgtattctgtggtggaagat
gaatatagtgagcctctaaagggcacagaaaaaaccttgccagtccctatagtcagcctg
aatatttatgacattggccctaccaccatgcgtgtgcagtggcagcctgtgggaggagct
accggctacactgtatcatatgaacctgttaagaccactgaatccacaaaacccaaagag
atgcgtgtggggccaaccgtgaacgatgtgcaactgactgacctccttcccagcactgaa
tatgaagtcacagtccaggctgtcttgcacgacctcactagtgaacctgccactgctcgg
gaaatgaccttgcctttgcccagacctcaagatgtgaaactcagagatgtcactcacagc
accatgagtgtcttttgggaacctgtgcttggaaaagtccggaaatacgttgttagatac
caaaccccagaagaggatgtcaaagaggtagaggtggacagatcacggaccagcacttcc
ctcaaagacctcctctcacaaaccctgtacacagtcagcgtttctgcagtgtatgatgaa
ggggagtctcccccagtgactgcccaagaaaccacccgacctgttccagcccccacaaat
ctaaggattactgaagtaacaccagagagtttcagaggaacttgggatcatggagcttca
gatgtgtctctctacagaataacttgggcaccttttgggagctcagataagatggagacc
atcttaaatggagatgaaaatactttggtgtttgaaaacctgaaccccaacactctctat
gaagtttctgttactgccatctatcctgatgagtcagaaagtgatgacctgaccggcagt
gagcgcacattgcgtctgatacctttaacaacacaagctccgaaaagtggcccacgaaac
cttcaggtgtacaatgcaacatctaacagtttgactgttaagtgggatcctgccagtggt
cgtgtgcagaaatacagaatcacttatcagccttcaacaggggaaggcaatgaacaaacg
accacaataggaggacggcagaacagtgtggtcctgcagaaactgaagcctgacactcct
tacacgatcaccgtgtcctccctgtatcctgatggcgaagggggtcggatgacgggaaga
ggcaagactaaacctctgaataccgtgaggaacctaagagtgtatgacccttctaccagc
accttgaatgttcgctgggaccatgcagagggaaatcctcgtcagtacaaactcttttat
gcaccaacagcaggtggctcagaggaattggtaccaatccctgggaataccaattatgcc
attctcaggaatctgcagccagataccccatacaccattacagtagttcctgtttataat
gaaggtgatggaggacgcacatcagatactgcaaggacattggtgagaggactggcaaga
aatgtgcaggtgtataaccccacacccaacagccttgatgttcgctgggatcctgctcct
gggcctgtgcagcagtatcgtgttgtgtattctcctgtggctggcacaagaccctcagaa
tctattgtggtgccaggaaatacccgcacagtgcacctggagcggctgactcctgacaca
ccctattctgtggacatcgtggccctgtactcggatggagagggcaatcccagccccagc
cagggccgcacattgccccgaggtggaccaaggaatctgagagtctttggggagacaacc
aatagcctctctgtagcctgggatcacgctgatgggccggttcagcaatacaggatcatt
tattctcccactgttggtgatccaattgatgaatataccacagtcccaggcagaagaaac
aatgtaatactgcaacccctgcaatctgatactccgtataaaattactgttattgctgtt
tacgaagatggagatggtggccatcttacaggaaatggaagaactgtgggactacttcct
cctcagaatatacacatctctgatgagtggtatacaagattcagggtgtcttgggatcct
tcaccttctccagttcttggctataaaattgtgtataagccagtgggttccaatgagccc
atggaagcttttgttggagaagtgacatcgtacacattacacaatctcaatcccagcacg
acctatgatgtgaatgtttatgctcagtatgattctggactcagtgttcccctgacagat
caaggcaccacattgtatttaaatgtgacagatctgaaaacttaccaggttgggtgggat
acattctgtgtcagatggtcacctcaccgggcagccacctcctacaggctaaaactaagc
cctgcagatggaaccagaggacaagaaattactgtgcgtggatcagaaactagtcattgc
ttcactggcctttcaccaggcagtgattatggtgtcactgtttttgtgcagacaccaaac
ctcgagggaccaggtgtccctatcaatgaacataccaccctgaaaccaacagaagcccct
acagagccacctacacctccaccccctcccaccattccaccagcccgtgatgtatgcaaa
ggggctaaggcagatattgtgttcttgactgatgcctcttggagtattggggatgataat
ttcaacaaagttgtaaaattcatctttaatactgtgggagcctttgatgaaatcagtcct
gctgggattcaggtttcatttgtacagtacagtgatgaggtcaaatctgagttcaagctg
aatacctacaatgacaaggcccaggccctgggagccctccagaatattaggtacagagga
ggaaacacaagaacaggcaaggccctcacatttatcaaggagaaggtcttgacctgggaa
agtggcatgaggaagaatgtccccaaggtgctggttgtggtcacagatggtcggtcgcag
gatgaggtcaagaaggcagcttttgtcatccagcagtcaggattcagtgtctttgtagtt
ggtgtggctgatgtcgactacaatgagcttgccaacattgccagcaaaccaagtgaacgg
catgtgttcattgtggatgactttgaatcctttgagaagattgaggacaaccttattaca
tttgtttgtgaaaccgccacttcaagttgtcctctcatttatttggatggctacacctca
ccaggttttaagatgcttgaagcatacaacctgacagaaaagaattttgcttctgtacaa
ggcgtgtctttggagtcagggtcttttcccagctactcagcttacaggcttcagaagaat
gcctttgtgaatcagcctacagcagacctacacccgaatggacttcctccttcatacaca
attatattactgttcagacttcttccagaaactcccaatgatccttttgcaatttggcaa
atcacagacagagactacaaaccacaagttggagtgattgcagatccttcaagcaagaca
ttatcattctttaacaaagatacaagaggcgaggtgcaaactgttacatttgacacagat
gaagtaaagacgttattttatggaagttttcataaggttcatattgtagtgacttcaaaa
agtgttaagatttatatcgactgctatgaaattatagaaaaagacatcaaagaagctggg
aatatcactactgatggttttgaaattcttgggaaacttcttaaaggggaaaagaagtca
gccacattccaaatccagaactttgacattgtctgcagcccagtgtggaccagcagagac
agatgctgtgatattccctcacggagagatgaagtgaaatgtcctgcccttccaaatgct
tgtacctgcacacaggacagtgttggacctccgggacctccaggccctgcaggaggacct
ggtgccaaaggtcccagaggtgaaagaggtatcaatggagcaattgggccccctggtcct
cgtggagatacaggtcctccaggcccccagggtcctccaggcccccagggacccaacgga
ctctcgattccaggagaacaaggtcgccaagggatgaaaggtgatgctggagaaccggga
cttccaggccgaacaggaaccccaggattaccaggcccgccaggaccaatgggacctcca
ggagacagaggcttcactggaaaagatggtgccatgggacccagggggccgcctgggcca
ccgggaagcccaggctctccaggagtcacaggaccaagtgggaaaccaggaaaacctgga
gaccatggaagaccgggtccatctgggttaaaaggagagaagggtgataggggagacatt
gcttctcagaacatgatgcgagcagttgcaagacaagtctgtgaacaaatgataagtggt
cagatgagcagattcaatcagatgttgaatcagattccaaacgattaccactccaatcga
aaccaaccgggcccgccaggccctccaggtcccccaggcagtgctggtgccagaggagaa
ccagggcctggagggcgaccaggcttcccaggcacaccagggatgcagggaccccctggt
gaacgaggtttgccaggagagaaaggtgaaaggggtaatggttctccaggacctcgaggg
ctgcctggccccccaggtccacaaggagaatctagaacaggtccaccagggtccacaggt
tccagaggtccccctggtccccctggtcgtcctggaaactcaggtatccgaggaccccca
ggtcctcctggatactgtgattcatcccagtgtgccagcatcccatacaacgggcaaggc
tatccagagccgtacgtgcccgagggcggggcctacctgcctgagcgcgagcccttcatc
gtgccggtggagcccgagcggacggcggagtacgaggactacggcgccgacgagcctgca
gaggagcagcctccccacgcgcgctggcggcgcgccctgccccgcggccccgggcagcga
ccctga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (30)   
   KEGG ORTHOLOGY (1)   
   RefGene (25)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (5)   
   RefSeq(pep) (5)   
DNA sequence (11)   
   RefSeq(nuc) (5)   
   GenBank (3)   
   EMBL (3)   
Protein domain (11)   
   Pfam (11)   
All databases (61)   

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