KEGG   Oryctolagus cuniculus (rabbit): 100340846
Entry
100340846         CDS       T03373                                 
Name
(RefSeq) polyadenylate-binding protein 4 isoform X3
  KO
K13126  polyadenylate-binding protein
Organism
ocu  Oryctolagus cuniculus (rabbit)
Pathway
ocu03015  mRNA surveillance pathway
ocu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ocu00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    100340846
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100340846
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ocu03019]
    100340846
   03041 Spliceosome [BR:ocu03041]
    100340846
Messenger RNA biogenesis [BR:ocu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     100340846
   mRNA cycle factors
    Stress granule specific factors
     100340846
Spliceosome [BR:ocu03041]
 Complex C
  Other components
   Complex C specific factors
    100340846
SSDB
Motif
Pfam: RRM_1 PABP RRM_5 RRM_7 RRM_3 ApbA_C
Other DBs
NCBI-GeneID: 100340846
NCBI-ProteinID: XP_002715240
Ensembl: ENSOCUG00000000562
Position
13:127010468..127026158
AA seq 644 aa
MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGEEVDDESLKDLFSQFGKTLSVKVMRDPSGKSKGFGFVSYEK
HEDANKAVEEMNGKEIGGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRP
PYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAIRQAGPRPTLRHLAPTGSECPDRLAMDF
GGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQ
APQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNS
ELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAAATS
NT seq 1935 nt   +upstreamnt  +downstreamnt
atgaacgctgcggccagcagctaccccatggcctccctgtacgtgggtgacctgcactcg
gacgtcaccgaggccatgctgtacgaaaagttcagtcctgcggggcctgtgctgtccatc
cgggtctgccgcgatatgatcacccggcgctccctgggttatgcctacgtcaacttccag
cagccagctgacgctgagcgggccttggacaccatgaactttgatgtgattaaggggaag
ccaatccgtatcatgtggtctcagagggatccctctttgagaaaatctggtgtgggaaat
gtcttcatcaagaacctggacaaatctatagataacaaggcactttatgatacgttttct
gcttttggaaacattctgtcctgcaaggtggtgtgtgatgagaacggctctaagggttat
gcctttgtccacttcgagacgcaagaggctgccgacaaggccatcgagaagatgaatggc
atgctcctcaatgaccgcaaagtgtttgtgggcagattcaagtcacgtaaagagcgggaa
gctgagcttggagccaaagccaaggaattcactaatgtttatattaaaaactttggggag
gaggtggatgatgaaagtctgaaagacctatttagtcaatttggtaaaaccctcagtgtc
aaggtgatgagagatcccagtgggaaatccaaaggctttggctttgtgagttacgaaaaa
cacgaggatgccaacaaggccgtagaagagatgaatggaaaagagattggtgggaaagtc
atatttgtaggccgcgcacagaagaaagtagaacggcaagctgaattaaaacggaaattt
gagcagctaaaacaggagcgaattagtcgataccagggtgtgaacctctacattaagaac
ttggatgacaccattgatgatgagaaattacggaaagaattttctccttttgggtcaatc
accagtgctaaggtgatgctggaggatggaagaagcaaaggatttggctttgtctgcttc
tcatctcctgaagaggcaaccaaagcagtcactgagatgaacggacgcattgtgggctcc
aagccactgtacgttgccctagcccagaggaaggaagagagaaaggcccacctgaccaac
cagtatatgcagcgggtggctggaatgagagcactccctgccaacgccatcttaaatcag
ttccagcctgcagctggtggctactttgtgccagcagttccacaggctcagggaagacct
ccttattacacccctaaccagttagcacagatgaggcctaatccacgctggcagcaaggt
gggagacctcaaggcttccaaggaatgccaagtgctattcgccaggctgggcctcgtcca
actcttcgccatctggctccaactgggtctgagtgcccggaccgcttggctatggacttt
ggtggggctggtgccgcccagcaagggctgactgacagctgccagtctggaggtgttcct
acagctgtgcagaatctagcaccccgcgctgctgttgctgctgctgcccctcgggctgtt
gctccatataaatatgcgtccagtgtccgcagccctcaccctgccatacagcctttgcag
gcaccccagcctgctgtccacgtgcaggggcaagagcccctgactgcctccatgctggct
gcagcacccccccaggaacagaaacagatgctgggagaacgattgttcccgctcatccaa
acgatgcactcaaacctggcgggcaagatcacgggaatgctgctggagatcgacaactcg
gagctgctgcacatgctggagtcccccgagtctctccgctccaaggtggatgaagctgtg
gcagttttacaagctcatcatgccaagaaagaagctgcccagaaggtgggcgctgttgct
gctgctacctcttag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (64)   
   KEGG ORTHOLOGY (1)   
   RefGene (59)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (6)   
   RefSeq(pep) (6)   
DNA sequence (12)   
   RefSeq(nuc) (6)   
   GenBank (3)   
   EMBL (3)   
Protein domain (6)   
   Pfam (6)   
All databases (94)   

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