KEGG   Oryctolagus cuniculus (rabbit): 100341564
Entry
100341564         CDS       T03373                                 
Name
(RefSeq) regulator of nonsense transcripts 3B isoform X1
  KO
K14328  regulator of nonsense transcripts 3
Organism
ocu  Oryctolagus cuniculus (rabbit)
Pathway
ocu03013  Nucleocytoplasmic transport
ocu03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ocu00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    100341564
   03015 mRNA surveillance pathway
    100341564
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ocu03019]
    100341564
Messenger RNA biogenesis [BR:ocu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     100341564
   mRNA cycle factors
    P-body specific factors
     100341564
SSDB
Motif
Pfam: Smg4_UPF3 RRM_1
Other DBs
NCBI-GeneID: 100341564
NCBI-ProteinID: XP_002720171
Ensembl: ENSOCUG00000010213
UniProt: G1SYU5
Position
X:complement(68527919..68544411)
AA seq 483 aa
MKEEKDHRPKEKRVTLLTPQGATGSVGGTSGDCGKGDDKQDRNKEKKEALSKVVIRRLPP
TLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL
DNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYATDNEKMTSTPET
LLEEIEAKNRELIAKKTTPLLSFLKNKQRMREEKREERRRREIERKRQREEERRKWKEEE
KRKRKDIEKLKKIDRVPERDKLRDEPKIKVHRFLLQAVNQKNLLKKPEKGDEKELDKRDK
AKKLDKENLNDERTSGQSCTLPKRSDVEYKDEKPKRPEDDSGRDYRERDRDYERDQERIL
RERERLKRQEEERRRQKERYEKEKAFKRKEEEMKKEKEALRDKGKKNESTESLGSSEKTE
KKEEVVKRDRIRNKDRPAMQLYQPGARSRNRLCPPDDSTKSGDSAIDKKQESGISHRKEG
GEE
NT seq 1452 nt   +upstreamnt  +downstreamnt
atgaaggaagagaaggaccacaggcctaaggagaagcgagtaaccctgttaacgccccag
ggagccacaggcagcgtcggtgggacttcgggggactgcggcaaaggggacgataagcag
gatcgcaataaagagaagaaagaggcgctgagcaaggtggtaattcgaagattacctccc
actctgaccaaggagcagcttcaggaacatcttcaacccatgcctgagcatgattatttt
gagtttttttctaatgatactagtctgtatcctcatatgtatgccagagcatacatcaac
tttaaaaaccaagaggacattatcttgttcagggatcggtttgatggctatgtattcctt
gacaataaaggtcaggaatatcctgctatagtagaatttgcaccttttcaaaaagctgca
aaaaagaagactaagaaaagagataccaaagttggaactattgatgatgatccagaatat
agaaaatttttggaaagttatgctacagacaatgagaaaatgacatctactccagagaca
ctgctagaggaaatagaagcaaaaaatagagaattaatagctaaaaagacaaccccactt
ttgagcttcctgaaaaacaagcagagaatgagagaagaaaagagagaagaaagaaggcga
cgagaaatagaaagaaaacggcagagggaagaagagagaagaaagtggaaagaagaagag
aaacgaaaaaggaaagatatagaaaagctgaagaagatagacagagttccagaaagggac
aaattaagggatgaaccaaagataaaggtacacaggtttctgttacaagctgtgaatcag
aaaaatttgctcaagaaaccagaaaagggagatgaaaaagaattggacaaaagagacaaa
gccaagaaactggataaagagaatctgaatgatgagcgaaccagtgggcaaagctgtacg
ttgcccaagcgttctgatgttgaatataaagatgaaaagccaaagagacctgaagatgac
agtggcagagactacagggagagggatcgcgactacgaacgagatcaggagcgcatactg
agagagagagagagactgaagcggcaagaagaagagcgccgtaggcagaaggagcgttat
gagaaagagaaggcttttaagagaaaagaagaagaaatgaagaaagaaaaagaagcactt
cgggataaaggaaagaagaatgaaagcacagaatcattaggcagctcagaaaaaactgaa
aagaaagaggaagtggttaagagagatcgcataagaaacaaggatcgcccagcaatgcag
ctttaccaaccaggagctcgaagccgaaatcgactctgtccccctgacgacagcaccaag
tctggagattcagcaatagacaaaaagcaggaaagtggtattagccatagaaaagaaggg
ggagaggagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (2)   
   Pfam (2)   
All databases (32)   

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