KEGG   Oryctolagus cuniculus (rabbit): 100352437
Entry
100352437         CDS       T03373                                 
Name
(RefSeq) transcription factor SOX-13 isoform X3
  KO
K09269  transcription factor SOX5/6/13 (SOX group D)
Organism
ocu  Oryctolagus cuniculus (rabbit)
Brite
KEGG Orthology (KO) [BR:ocu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ocu03000]
    100352437
Transcription factors [BR:ocu03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   HMG SOX
    100352437
SSDB
Motif
Pfam: HMG_box HMG_box_2
Other DBs
NCBI-GeneID: 100352437
NCBI-ProteinID: XP_008266766
Ensembl: ENSOCUG00000023464
Position
16:17591885..17633948
AA seq 633 aa
MWRALLRVCSVPPAQGDRMSMRSPDSAQLAPDGGGTMVNCTIKSEERKEPGHEVPLGAAT
EEEPQSADPARAPQPQEGAEPQPPAQDCGSPRSDGSPDPKRPAALEAATGSQKLDFSQNL
KEVVPAIEKLLSSDWRERFLGRSSVEAKDVKGTQESLAEKELQLLVMIHQLSTLRDQLLT
AHSEQKNMAAMLFEKQQQQMELARQQQEQIAKQQQQLIQQQHKINLLQQQIQQVNMPYVM
IPAFPPSHQPLPVAPDSQLALPIQPIPCKPVEYPLQLLHSPPAPAVKRPGAVAAHLPLQE
PSQPLNLTAKPKAPELSSASSSPSLKMSSCGPRPPSHGAPTRDLQASPPSLPLGFLGEGD
AVTKAIQDARQLLHSHGGALESAPSAPFRKDLINLDSSPAKERLEESCVHPLEEAMLSCD
VDGSRPFPESRNSSHIKRPMNAFMVWAKDERRKILQAFPDMHNSSISKILGSRWKSMSNQ
EKQPYYEEQARLSRQHLEKYPDYKYKPRPKRTCIVEGKRLRVGEYKALMRTRRQDARQSY
VIPPQAGQVQLSSSDVLYPRAAGMPLAQSLVEHYVPPSLDPNMPVIVNTCSLREEGEAAD
ERHSAADGEVCRYSEDDDSEGDKSDSELVVLTD
NT seq 1902 nt   +upstreamnt  +downstreamnt
atgtggcgtgccctcctgagggtctgttctgtgccaccggcccaaggagacaggatgtcc
atgaggagccccgactctgcccagctggccccagatggcggcggcaccatggtgaactgc
accatcaagtcagaggagaggaaggagcctggtcatgaggtccccctgggcgcagccacc
gaggaggagccccagtctgcagacccagcccgcgcgccccagccgcaggagggtgctgag
ccccagcctccagcgcaggactgtggctctccacggagtgatgggtccccagatcccaag
agacctgcagccttggaggctgcaactggaagccagaagctggacttcagccagaacctg
aaggaagtggtgccggccatcgagaagctgctgtccagtgactggagggagaggtttcta
ggaaggagctctgtggaagccaaagatgtcaaagggacccaggagagcctggcggagaag
gagctgcagctcctggtcatgatccaccagctgtccaccttgcgggaccagctgctgacc
gcgcactcggagcagaagaacatggctgccatgctgttcgagaagcagcagcagcagatg
gagctggcccggcagcagcaggagcagatcgccaagcagcagcagcagctgatccagcag
cagcacaagatcaacctcctgcagcagcagatccagcaggtcaacatgccttacgtcatg
atcccagccttcccgccgagccaccagcctctgcctgtcgcccccgactcccagctagcc
ctgcccatccagcccatcccttgcaaaccagtggagtacccgctgcagctgctgcacagc
ccacccgcccctgcagtgaagaggcccggggctgtggccgcccacctccccctgcaggag
ccctcccagcccctgaacctcacagccaagcccaaggcccccgagctgtccagcgcctcc
agctcccccagcctaaagatgagcagctgtggcccccgcccgcccagccacggggccccc
acccgcgacctgcaggccagccccccgagcctgcctctcggcttcctcggtgagggggat
gcggtcaccaaagccatccaagacgcccggcagctgctgcacagccacggcggggccttg
gaaagtgcccccagcgcccccttccgtaaggacctcatcaacctggactcgtccccagcc
aaggagcggctggaggagagctgtgtgcaccccctggaggaagccatgctgagctgcgac
gtggatggctcccgccccttcccggagtcccggaacagcagccacatcaagaggcccatg
aacgccttcatggtgtgggccaaggacgagcgcaggaagatcctgcaagcttttccggac
atgcacaactccagcatcagcaagatcctcggctcccgctggaagtccatgagcaaccag
gagaagcagccctactacgaggaacaggcgcggctgagccggcagcacctggagaagtac
cccgactacaagtacaagccgcggcccaagcgcacgtgcatcgtggagggcaagcggctg
cgcgtgggcgagtacaaggccctgatgcggacccggcgccaggacgcccgccagagctac
gtgatccctccgcaggccggccaggtgcagctgagctcctcggacgtcctgtacccccgg
gcggcggggatgcccctggcacagtcgctggtggagcactacgtgcccccgagcctggac
cccaacatgccagtcatcgtgaacacctgcagcctccgggaggagggcgaggcggcggac
gagcggcactcagcggccgacggcgaggtgtgcaggtacagcgaggacgacgactccgag
ggcgacaagagtgactcggagctggtggtgctcacggactga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   RefGene (22)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (6)   
   RefSeq(pep) (6)   
DNA sequence (12)   
   RefSeq(nuc) (6)   
   GenBank (3)   
   EMBL (3)   
Protein domain (2)   
   Pfam (2)   
All databases (50)   

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