KEGG   Oryctolagus cuniculus (rabbit): 103347320
Entry
103347320         CDS       T03373                                 
Name
(RefSeq) DNA-binding protein SMUBP-2
  KO
K19036  ATP-dependent RNA/DNA helicase IGHMBP2 [EC:5.6.2.5 5.6.2.3]
Organism
ocu  Oryctolagus cuniculus (rabbit)
Brite
KEGG Orthology (KO) [BR:ocu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:ocu03009]
    103347320
   03012 Translation factors [BR:ocu03012]
    103347320
Enzymes [BR:ocu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     103347320
    5.6.2.5  RNA 5'-3' helicase
     103347320
Ribosome biogenesis [BR:ocu03009]
 Eukaryotic type
  Other ribosome biogenesis factors
   103347320
Translation factors [BR:ocu03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    103347320
SSDB
Motif
Pfam: AAA_11 AAA_12 SMUBP-2_HCS1_1B AAA_30 R3H AAA_19 zf-AN1 Viral_helicase1 DEAD nSTAND3 ResIII AAA_16 AAA_22 SLFN-g3_helicase UvrD-helicase Helicase_RecD IstB_IS21 Flavi_DEAD AAA PhoH AAA_25 Zot ABC_tran UvrD_C_2 NTPase_1 Herpes_Helicase DAP3 DnaB_C
Other DBs
NCBI-GeneID: 103347320
NCBI-ProteinID: XP_051683801
Ensembl: ENSOCUG00000023128
Position
Unknown
AA seq 1001 aa
MAAAVESFVTKQLDLLELEREAEVEERRSWQESLSLKELQSRGVCLLRLRVSGQRTGLYG
RLLVTFEPRKSVSAGELPSNSFASGDIVGLYDTASEGGQLATGILTHLTQKSVTVAFDEG
HDLQLGLDRDGSYRLLKLANDVTYKRLRKALLTLKKGHWGPASSLTDVLLGGSTPSPARE
AQPLVFFNAALDASQKEAVSFALSQKELAIIHGPPGTGKTTTVVEVILQAVKQGLKVLCC
APSNVAVDNLVERLARCKQRIVRLGHPARLLPSIQQHCLDAVLARSDGAQLVADIRKDID
QVFVKTTKTQERREKSSLRDEVRLLRKELQAREEAAMVESLSAASVVLATNTGASPDGPL
KLLPESHFDVVVVDECAQALEASCWIPLLRARKCILAGDHKQLPPTTVSPKAALAGLSRS
LMERLAEEHGENVMRVLTVQYRMHQAIMRWASEAMYHGQLTAHPSVAGHLLQDLPGVAAT
EETGIPLLLVDTAGCGLFELDEGNQSKGNPGEVRLVSLHIQALVDAGVQASDIAVITPYN
LQVDLLRQSLARRHPELEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVT
RARRHVAVVCDSRTVSNHAFLKTLVDYFTEHGEVRTAFEYLDDIVPENYGQAVEKPRGPG
VAAQKPAGSRRQEGAQEATAAARQPPRQPGGKPAGSGAPLQASPSGGGPAGAGGGGSAQH
LRALLTEFVASEETRLEFPASLNAHDRLRVHQIAEELGLRHSSAGEGKARYITVSKRTPP
SRPPTAPSDSSAPVPAAAPVPAAPPGPAQEEQPPGEQPPGEQPPKEPHGQGQPDLKALHL
ERLQRAKGEPGPQTERGQPAGGAGPQSLPGKKKKKDAKGRPARDPPPEEDFDALVSAAVK
ADNTCSFARCTASVAALGQLCQLCSRRYCLSHHLPEVHGCGEKARAHARQRISREGVLYA
GSGTKDRSLDPARRAQLQRKLGKKLGELSSQRTSKKKERGT
NT seq 3006 nt   +upstreamnt  +downstreamnt
atggccgcggcggtggagagcttcgtgacgaagcagttggacctgctggagctcgagagg
gaagcggaggtggaggagcgcaggtcctggcaggagagcctctctctgaaggagctgcag
agccggggcgtgtgtctgctgaggctgcgggtgagcggccagcgcaccgggctctatggc
cggctgctggtcaccttcgagcccaggaagagcgtctcggcgggggagctgcccagtaac
agcttcgcctcgggtgacatcgtgggtctgtatgacactgccagcgaaggcggtcagctg
gccacggggatcctcacccacctcacccagaaatccgtcaccgtggccttcgatgagggc
cacgatctccagctgggcctggaccgagacggctcctaccgcctgttaaagctcgccaac
gacgtcacttacaagcgactgagaaaagctctgcttaccctgaagaagggccactggggc
ccagcgtcctcgctcaccgatgtcctgctcggcgggtccacgcccagccctgcccgcgaa
gcccagcccctcgtcttcttcaacgctgccctggacgcctcccagaaggaagctgtatcg
tttgcgctgtcccagaaagagctcgccatcatccacgggcctcctggcacagggaagacc
acgaccgtggttgaagtcatcctgcaggccgtgaaacaaggcttgaaggttctgtgctgt
gcgccctccaacgttgccgtggacaacctggtggagcggctggcccggtgcaagcagcgg
atcgtgcgtctgggccaccccgcgcgcctcctgccctccatccagcagcactgcctggac
gccgtgctggcgcggagcgacggcgcccagctcgtggccgacatcaggaaggacatcgac
caggtctttgtgaagaccaccaagacccaggagaggcgggagaagagtagcctccgggac
gaggtgaggctgctgcggaaggagctgcaggcgagggaggaagcggccatggtggagagc
ctcagcgcggccagcgtggtccttgccacgaacacaggtgcctctcccgacggccccctg
aagttgctgcccgagagccacttcgacgtggtggtcgtggacgagtgcgcccaggcgctg
gaggcgagctgctggatcccgctgctgagggcccggaagtgcatcctggctggagaccac
aagcagctgccgcccaccaccgtgtcccccaaggccgcactggcggggctgtcgcggagc
ctgatggagcggctggccgaggagcacggcgagaacgtgatgcgggtgctgacggtgcag
taccgcatgcaccaggccatcatgcgctgggcctcggaggccatgtaccacgggcagctc
acggcccacccctccgtggcggggcacctcctgcaggacctcccgggtgtggccgccacc
gaggagacaggcatccccttgctgctggtggacaccgccggctgtgggctgtttgagctg
gatgagggcaaccagtccaaggggaaccctggtgaagtccgcctcgtcagtttgcacatc
caggctctggtggatgctggggtccaagcaagtgacattgccgtcatcacgccctacaac
ctgcaggtggacctgctgagacagagccttgcccgtaggcaccccgagctggaaatcaaa
tccgtcgacggcttccagggacgagagaaggaggcagtgatcctgtcctttgtccggtcc
aacaggaaaggggaagttggctttctggccgaggaccggcggatcaacgttgccgtgacc
cgcgcccggcgccacgtggcagtcgtgtgcgattcccgcaccgtcagcaaccacgctttc
ttgaagaccctggtggattatttcacagagcacggagaagtgcgcaccgccttcgagtac
cttgacgacatcgtccccgaaaactacggccaagccgtcgagaagccgcggggccccggc
gtggccgcccagaagcccgctgggagccggcggcaggagggcgcccaggaggctacagcg
gcggccaggcagccccccaggcagccgggcgggaagccggcggggtccggagcccccttg
caagccagccccagcggaggcggccccgcgggcgccgggggcggaggcagcgcgcagcac
ctcagggccctcctcaccgagtttgtggccagcgaggagacgcggctggagtttcccgcg
tccctgaacgcccacgacaggctgcgggtgcaccagatagccgaggagctggggctgagg
cacagcagcgcgggggaggggaaggccaggtacatcacagtgagcaagaggaccccgccc
tcccggccacccacagcgccatcagacagctcggcccccgtacctgccgcggcccccgta
cccgctgcgcccccgggccccgcgcaggaggagcagccccccggggagcagccccccggg
gagcagccccccaaggagccgcatggccagggccagccagacctgaaggcgctccacctg
gagagactgcagagggcgaagggggagcccgggccgcagaccgagagggggcagccggcc
gggggcgccgggccgcagagcctccccggcaagaagaagaagaaagacgcgaaaggacgt
ccggccagagacccgcccccggaggaggacttcgacgctctggtctcggcggccgtgaag
gccgacaacacctgcagcttcgccaggtgcacagccagcgtcgccgccctgggccagctc
tgccagctctgcagccgccgctactgcctcagccaccacctgcctgaggtccacggctgc
ggcgagaaggcccgcgcgcacgcgcggcagagaatcagccgggagggcgtgctgtatgcc
ggcagtgggaccaaggacaggtccctggacccggccaggagggcacagctgcagaggaag
ctgggtaagaagctgggcgagctcagcagccagaggacgagcaagaagaaggagcggggg
acgtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (34)   
   KEGG ORTHOLOGY (1)   
   RefGene (29)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (9)   
   RefSeq(nuc) (1)   
   GenBank (4)   
   EMBL (4)   
Protein domain (28)   
   Pfam (28)   
All databases (79)   

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