KEGG   Tepiditoga spiralis: OSSY52_00890
Entry
OSSY52_00890      CDS       T06810                                 
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ocy  Tepiditoga spiralis
Pathway
ocy03410  Base excision repair
ocy03430  Mismatch repair
ocy03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ocy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    OSSY52_00890
   03430 Mismatch repair
    OSSY52_00890
   03440 Homologous recombination
    OSSY52_00890
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ocy03400]
    OSSY52_00890
DNA repair and recombination proteins [BR:ocy03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     OSSY52_00890
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     OSSY52_00890
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      OSSY52_00890
SSDB
Motif
Pfam: DHH DHHA1 RecJ_OB ERbeta_N ADH_zinc_N DXPR_C Toprim
Other DBs
NCBI-ProteinID: BBE29948
UniProt: A0A7G1G1C1
Position
complement(87802..90909)
AA seq 1035 aa
MKSIWRIFWDTNDPNYERNLKVSRSISNGAKVSEFLAKLMVSRGITNTEEAIKFLNPSEK
DVIDPFKLKDMDKAVDLLLNILSKKEKIVVFGDYDVDGVTAASTLYLGLRDLGYDVEAYI
PSRLEEGYSLNVEAIEEFKNNGFNNIITVDCGITSIVEVKYAKNLGMKVIVTDHHEQQEV
LPPADAVINPKRRDTSYPFRGLAGVGVAFKLLLAISSKIKSNFNPYDYIDLVAVGTIADI
VPLLSENRYFVKLGIEKLKTNPLPGLNGLLKELKVSNSEIKSNIIAYKVAPKINAAGRMA
DAVTAFNLLISKDKEEINKYVLALLKLNTKRQAKEKEIYLFALSLMDVNPKLKNDKVIVL
SGENWHLGVLGIVASKLSAQFNKPVLMISKEGEFGKGSSRSPQGINLIEIFKRASEKGVF
KEFGGHELAAGFTTYSSKIEELRIAVNNAYKEIYGDSKPTLEVSIDSEIDKIWSNFFDDI
KKLEPYGYKNPEPTFFIKNMHIENLKFFGTAVESFAGKSRDKDYIMDTIGYGLSQKLKDI
RFNGPTSINIDAVGNFREEPAFNSKRTFLKFYLKDLSLIEKNNKYLSLNEFDVNSLLNEE
ISKVSKIKAIINNLNSKKVAMFLPSKVKYAVIMKKIVESLNKNKKIIIVGSSHVNLKHTY
NIISSYISPTIICYNKKSKLSIKNLNEKNIIFITVPSFFKNLKMFTGNKFDFIVDEPFYS
VAHPAVKSIKEYSEFRKFLNYKEDNISILGSIYHETLKEFLKVAGYKVLISNINQSNFEI
IKEKKKLNEVLKDYLNSYNKKIIVINNRKKQELIKNFIVEKLNIPEETIKIFNEDIEFSK
KLMLREKLKKTSSNILITSYSNNGLGMKISDKKPVFILLEPPKTRLELIDLVSNWNVNNY
HVNIVLAYDNKFKMRLNYEYAKEYPSQNILKQSFDFIKNNPDLKETDIIKNLFKDDREIG
KIVLDELIDSGLILNSSGKYEVLDEFDLKLLHKSIKIKESILDNWIIKETIDFFKDVDTK
KFMQMLKTNITEIRR
NT seq 3108 nt   +upstreamnt  +downstreamnt
gtgaaaagtatatggaggatcttttgggatacaaatgatcctaattatgagagaaattta
aaagtttctcgaagtatttctaatggagctaaagtcagtgagtttttagctaagttaatg
gtatcaagaggtattactaatacagaagaagcaataaaatttttgaatccatctgaaaaa
gatgttattgatccattcaaattaaaagatatggataaagctgttgatttattattgaat
attttatcaaaaaaagaaaaaatagtagtttttggagattatgatgtagatggggtgact
gccgcatctactctttatttgggtttaagagatttaggttatgatgttgaagcatatatt
ccaagtagattagaagaaggatatagtttaaatgttgaagctattgaagagtttaaaaat
aatgggtttaataacattattacagttgattgtgggataacttcgattgtagaagttaaa
tatgctaaaaatttaggtatgaaagtaatagttacagatcatcacgaacaacaagaagta
cttccaccagcagatgctgttattaatccaaagagaagagatacgagttatccatttagg
ggattagctggagtaggagttgcttttaaattacttttggctatttcatcaaaaataaaa
tctaattttaatccctatgattatatagatcttgttgcagtgggaactattgctgatata
gtgcctttattatcagaaaatagatactttgttaaacttgggatagaaaaattgaaaacc
aatcctttgccagggttaaatggacttttaaaagaattaaaagtatctaattcggaaata
aaatcaaatataatagcttataaggttgcaccaaaaataaatgcagctggaagaatggca
gatgcagttactgcctttaatttgcttatttcaaaagataaagaagaaataaataagtat
gtattagcacttttaaaactcaatactaaaaggcaagcaaaagaaaaagaaatttattta
tttgcgttgagccttatggatgttaatccaaaattaaaaaacgataaagtaatagtttta
agtggtgaaaattggcatttgggtgttttagggattgttgcttcaaaattgtctgctcaa
tttaataaacctgtgttgatgatatcaaaagaaggcgaatttggaaaaggatcttcaaga
agtccacaaggaattaatttaatagaaatttttaaacgagcatctgaaaaaggtgttttt
aaagaatttggtggtcatgaacttgcagctggctttactacatactcttcaaaaatagaa
gaattaaggatagcggtaaataatgcttataaagaaatttatggagatagtaaaccaact
cttgaagtttcaattgattcagaaatagataaaatttggtcaaatttttttgatgatata
aaaaaacttgaaccttatggttataaaaaccctgaaccaactttttttattaaaaatatg
catattgaaaatttaaaattttttggaacagcggttgaaagttttgctggaaaatcaaga
gataaagattatattatggatactatagggtatggactttctcaaaagttaaaagatata
agatttaatggaccaacaagcataaatatagatgctgttggaaattttagagaagaacca
gcgtttaattctaaaagaacatttttaaagttttatttaaaagatttatctttaatagaa
aaaaataataagtacttgtcattaaatgaatttgatgttaattcattgttaaatgaagaa
atttcaaaggtatcgaaaatcaaagctattataaataatttaaatagtaaaaaagttgct
atgtttttaccaagtaaggtaaagtatgcagttataatgaaaaaaatagtagaatcttta
aataaaaataaaaagattattattgttggatcttctcatgttaatttaaaacatacttat
aatataatatcttcttatatttcaccaacgataatttgttataataaaaaaagtaaactt
agtataaaaaatttgaatgaaaaaaatattatatttataaccgttccatctttttttaaa
aatttaaaaatgtttacgggaaataaatttgattttattgtagacgaaccattctattca
gttgcacacccagcggtaaagtctataaaagaatactctgagtttagaaaatttttaaat
tataaagaagataatatatcaatattaggatcaatatatcatgaaactttaaaagaattt
ttaaaagttgcaggttataaagtattaatatcaaatatcaatcaatcaaactttgaaatt
ataaaagaaaaaaagaagttaaatgaagtattaaaggattatttgaattcatataataaa
aaaatcattgttataaacaacagaaaaaaacaagaacttataaaaaattttatcgttgaa
aaattaaatattcccgaagaaacaataaaaatatttaatgaagatatagagttttcaaaa
aaattaatgttaagagaaaaattgaaaaaaacatcctctaatatactcattacttcatat
tcaaataatggtttaggtatgaaaattagtgataaaaaaccagtttttatattattagaa
ccaccaaaaacacgacttgaattaattgatttggtttcaaactggaatgtaaataattat
catgtgaatatagttttagcttatgataataaatttaaaatgagattgaattatgagtat
gcaaaagagtatccatcacaaaatattttgaaacaatcttttgattttataaaaaataat
cctgatttgaaagaaactgatattataaaaaatttatttaaagatgacagagaaataggg
aaaatagtattagatgaactaattgattctggattgattttaaattcatctggtaaatat
gaggttttagatgaatttgatttaaaacttcttcataagagtataaaaataaaagaaagt
attttagacaattggataataaaagaaacgattgatttttttaaggatgtagatacgaaa
aaatttatgcaaatgttaaaaacaaatataacagaaattaggagatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (16)   

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