KEGG   Oerskovia sp. KBS0722: FFI11_000080
Entry
FFI11_000080      CDS       T06124                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K10843  DNA excision repair protein ERCC-3 [EC:5.6.2.4]
Organism
oek  Oerskovia sp. KBS0722
Pathway
oek03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:oek00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    FFI11_000080
  09124 Replication and repair
   03420 Nucleotide excision repair
    FFI11_000080
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:oek03021]
    FFI11_000080
   03400 DNA repair and recombination proteins [BR:oek03400]
    FFI11_000080
Enzymes [BR:oek01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     FFI11_000080
Transcription machinery [BR:oek03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     FFI11_000080
DNA repair and recombination proteins [BR:oek03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     FFI11_000080
SSDB
Motif
Pfam: ERCC3_RAD25_C Helicase_C_3 ResIII Helicase_C DEAD SNF2-rel_dom PIG-L AAA_22
Other DBs
NCBI-ProteinID: QDW61139
Position
21305..22972
AA seq 555 aa
MADGPLIVQSDKTLLLEVDHPRSGDARRAIAPFAELERAPEHVHTYRLTPLGLWNARAAG
HDAEQVVNVLLEYSRYPVPHALLVDVAETMARYGRLQLVAHPTHGLVLQATDKAVLAEVL
KSKRTAGLVGDRLGDDSVVVHPSERGHLKQVLLKLGWPAEDLAGYVDGEKHPIDLSPTDP
AHEDKPWAMRPYQQQAVEGFWHGGSGVVVLPCGAGKTIVGAGAMAKSGTTTLILVTNTVS
ARQWRDELVRRTTLTEDEIGEYSGARKEIKPVTIATYQVLTTKRKGVYTHLELLDARDWG
LVVYDEVHLLPAPIFRMTADLQARRRLGLTATLVREDGREDEVFSLIGPKRYDAPWKDIE
AQGYIAPADCVEVRLTLSDRDRMAYATAEPEDKYRLAATAAGKNRVVEQIAAAHPDDQVL
VIGQYLDQLEELGDHLDAPVITGATTVRERQRLFEAFRSGEISRLVVSKVANFSIDLPEA
SVAIQVSGSFGSRQEEAQRLGRIMRPKQDGRTAHFYAVVSRDTVDQDFAAHRQRFLAEQG
YAYRIVDAEDLGVVQ
NT seq 1668 nt   +upstreamnt  +downstreamnt
atggccgacggccccctgatcgtgcagagcgacaagaccttgctgctcgaggtcgaccac
ccccgctcgggcgacgcccgacgggcgatcgcccccttcgccgagctcgagcgcgccccc
gagcacgtccacacctaccggctcacgccgctcgggctgtggaacgcgcgcgccgcgggg
cacgacgccgagcaggtcgtcaacgtgctgctcgagtacagccgctaccccgtgccgcac
gcgctgctcgtcgacgtcgccgagaccatggcgcgctacgggcggctccagctcgtcgcg
cacccgacgcacgggctcgtgctccaggcgacggacaaggccgtgctcgccgaggtcctc
aagtccaagcggaccgctggtctggtcggcgaccggctcggagacgactcggtggtcgtg
cacccgtccgagcgcgggcacctcaagcaggtcctgctcaagctcggctggcccgccgag
gacctcgcggggtacgtcgacggcgagaagcacccgatcgacctgtcgccgaccgacccg
gcgcacgaggacaagccctgggccatgcggccctaccagcagcaggccgtcgaggggttc
tggcacgggggcagcggcgtcgtcgtgctcccttgtggcgcgggcaagacgatcgtcggc
gcgggggccatggcgaagtccgggacgacgacgctgatcctcgtgacgaacacggtgagc
gcgcgacagtggcgcgacgagctcgtgcggcgcacgacgctcaccgaggacgagatcggc
gagtactcgggcgcccgcaaggagatcaagcccgtcacgatcgcgacgtaccaggtgctc
acgaccaagcggaagggcgtctacacgcacctcgagctgctcgacgcgcgcgactggggc
ctcgtggtctacgacgaggtccacctgctgcccgcaccgatcttccgcatgacggcggac
ctccaggcgcgccgccgcctgggcctgaccgcgacgctcgtgcgcgaggacggacgcgag
gacgaggtcttcagcctcatcgggcccaagcggtacgacgcgccctggaaggacatcgag
gcccaggggtacatcgcgcccgcggactgcgtcgaggtgcgcctcaccctgtccgaccgc
gaccgcatggcgtacgcgaccgccgagcccgaggacaagtaccggctcgcggccaccgcg
gcgggcaagaaccgcgtcgtcgagcagatcgcggccgcgcaccccgacgaccaggtcctc
gtgatcggccagtacctcgaccagctcgaggagctcggcgaccacctcgacgcgcccgtc
atcacgggggccacgaccgtgcgcgagcggcagcggctgttcgaggcgttccggtccggg
gagatctcgcggctcgtcgtgagcaaggtcgcgaacttctcgatcgacctgcccgaggcg
tcggtcgcgatccaggtgtcggggtcgttcgggtcgcgccaggaggaggcccagcgcctg
ggacgcatcatgcgccccaagcaggacgggcgcaccgcgcacttctacgccgtggtctcg
cgagacaccgtggaccaggacttcgcggcgcaccgccagcgcttcctggcggagcagggc
tacgcgtaccgcatcgtcgacgccgaggacctgggcgtcgtgcagtag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (8)   
   Pfam (8)   
All databases (17)   

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