KEGG   Oerskovia sp. KBS0722: FFI11_014345
Entry
FFI11_014345      CDS       T06124                                 
Name
(GenBank) ribonuclease D
  KO
K03684  ribonuclease D [EC:3.1.13.5]
Organism
oek  Oerskovia sp. KBS0722
Brite
KEGG Orthology (KO) [BR:oek00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:oek03016]
    FFI11_014345
Enzymes [BR:oek01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     FFI11_014345
Transfer RNA biogenesis [BR:oek03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    FFI11_014345
SSDB
Motif
Pfam: DNA_pol_A_exo1 DNA_pol_A_exoN HRDC
Other DBs
NCBI-ProteinID: QDW63527
Position
3182828..3184312
AA seq 494 aa
MSSAHTPSFSHAPDGRGGARAASDPEPAGAQDAPVAPTSDAPGAPETSDAPAAQAAQAAP
AAPAVPSVIPLTEPADGVGPVIDTPEAFAEVVAAFAAASGPVAADAERASGYRYGQRTYL
VQVRREGAGTALIDPIGVPDLSPLREAVGDAEWILHAASQDLPGFAEQNLHPARIFDTEL
AARLLGMERVGLAAVIAEVLGLGLAKEHSAADWSTRPLPVDWLRYAALDVEVLIPLRKIL
GERLEEQGKAEWAAQEFEAVRTAPPPPPREEPWRRTSGVHALRNPRSLAVVRSLWEARDE
NARRRDIAPGRVLPDRAIVAAAQAMPRSVPELVRLPAFSGRNTARRAASWQQAIDKALAL
PQDALPSSRGPRSDAPPPPRAWAERDPEAARRLDAARAVVQRLSDEHDVPLENLLQPDAL
RRVCWTPPTPPDTEHVAQFLRGRGAREWQVELVAEPLAAALADPGSVPRPVPTTGTGAAT
RSDDGGDHGGPSTD
NT seq 1485 nt   +upstreamnt  +downstreamnt
atgagctcggcccacaccccctcgttctcgcacgcgcccgacggccgcggcggtgcccgc
gcggcgtccgacccggagcccgccggcgcgcaggacgcgcccgtcgcacccacgtccgac
gcgcccggcgcgcctgagacgtccgacgcgcccgctgcgcaggctgcgcaggctgcaccg
gctgcaccggctgtaccgtcagtgatcccgctcaccgagcccgccgacggcgtcggcccc
gtgatcgacacgcccgaggccttcgccgaggtcgtcgcggcgttcgccgcggcctccggc
cccgtcgcggccgacgccgagcgtgcctcgggctatcggtacggccagcgcacgtacctc
gtccaggtccgccgcgagggcgccgggaccgcgctcatcgaccccatcggcgtccccgac
ctctcgcccctgcgcgaggccgtgggcgacgccgagtggatcctgcacgcggcctcgcag
gacctgcccggtttcgccgagcagaacctgcaccccgcccgcatcttcgacaccgagctc
gcggcccgcctgctgggcatggagcgcgtggggctggccgcggtcatcgcggaggtcctg
ggcctcggtctcgccaaggagcactcggccgccgactggtccacgcgaccgctgcccgtg
gactggctgcgctacgcggcgctcgacgtcgaggtactcatcccgctgcgcaagatcctg
ggcgagcggctcgaggagcagggcaaggccgagtgggccgcgcaggagttcgaggccgtg
cgcaccgctcccccgccgccgccccgtgaggagccgtggcgtcgcacgtcgggcgtgcac
gcgctgcgcaacccgcgcagcctcgcggtcgtgcgcagcctgtgggaggcgcgcgacgag
aacgcccgtcgtcgggacatcgcccctggccgggtgctgccggaccgtgcgatcgtcgcg
gcggcccaggccatgccgcgctcggtgcccgagctcgtccggctgcccgcgttctcggga
cgcaacacggcccgccgggcggcgtcgtggcagcaggcgatcgacaaggccctggctctg
ccgcaggacgcgctgccgagctcgcggggcccccgcagcgacgccccgccgcccccgcgc
gcctgggccgagcgcgaccccgaggccgcgcggcgcctggacgcggcacgcgccgtcgtg
cagcgcctctcggacgagcacgacgtgccgctcgagaacctcctgcagcccgacgcgttg
cgtcgcgtgtgctggacgccgcccacgccgccggacaccgagcacgtcgcacagttcctg
cgcgggcgcggtgcccgcgagtggcaggtcgagctcgtggcggagcccctcgcggcggcc
ctcgccgaccccgggtcggtcccgcgtcctgtgcccacgacgggcacgggggccgcgacc
cgctcggacgacggcggggaccacggcggcccgagcacggactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (3)   
   Pfam (3)   
All databases (10)   

Download RDF
DBGET integrated database retrieval system