KEGG   Olea europaea var. sylvestris (wild olive): 111409808
Entry
111409808         CDS       T05244                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9 isoform X1
  KO
K12598  ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
Organism
oeu  Olea europaea var. sylvestris (wild olive)
Pathway
oeu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:oeu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    111409808
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oeu03019]
    111409808
   03041 Spliceosome [BR:oeu03041]
    111409808
   03009 Ribosome biogenesis [BR:oeu03009]
    111409808
   03016 Transfer RNA biogenesis [BR:oeu03016]
    111409808
Enzymes [BR:oeu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     111409808
Messenger RNA biogenesis [BR:oeu03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     111409808
Spliceosome [BR:oeu03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    111409808
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    111409808
Ribosome biogenesis [BR:oeu03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    111409808
Transfer RNA biogenesis [BR:oeu03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    111409808
SSDB
Motif
Pfam: DSHCT MTR4_beta-barrel DEAD MTR4-like_stalk ResIII Helicase_C ATPase_2 Zot
Other DBs
NCBI-GeneID: 111409808
NCBI-ProteinID: XP_022895635
Position
15:complement(2279634..2288522)
AA seq 995 aa
MESLKRKSLEGTMEDTESPPLKQHRENDLVGLDGSVACVHDVSYPQGYVPRVLNSTMATQ
EDAKPAKEFPFKLDPFQSEAIRCIHHGESVMVSAHTSAGKTVVALYAIAMSLQNKQRVIY
TSPIKALSNQKYREFKEEYSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEVIREVA
WIIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHQQPCHIV
YTDYRPTPLQHYIFPSGGSGLYLAVDEKGKFREDSFQKALNALSPITEGDRKRENGKWQK
GLVVGKAGEDSDIFKMVKMIIQRQYDPVICFSFSKMECESLAMQMAKMDLNDDNEKVNVE
TIFWSAMDMLSDDDKKLPQVSNLLPILKRGIGVHHSGLLPILKEVIEILFQEGFIKCLFA
TETFSIGLNMPAKTVVFTNVRKFDGNKFRWISSGEYIQMSGRAGRRGIDERGICILMVDE
KLEPSTAKMMLKGSADPLNSAFHLSYNMLLNQIRSEDGDPENLLRNSFYQFQADRAIPDL
EKQAKVLEEERDSIIIEEEDSLENYYSLLQQYKILKKDVRDIVFSPKYCLPFLQPGRLVC
IQCTKNDESSSSFSIKDEVTWGVIINFERVTGLSEDDVNKKAEDANYTVDVLTRCRVHKD
EVAKKIIKIVPLKDPGEPAVISVPISQIDSLSSVRLIIPKDLLPLEARENTLKKVSEVLS
RFAKGGLPLLDPEDDMKVQSGSFKKAVRRIEALENLFEKHEIAKSLLIEQKLTVLHKKKE
LTAKIKSIRKTMRSSSALAFKDELKARKRVLRRLGYITSDDVVELKGKVACEISSADELT
LTELMFSGVLKDMKVEEMVALLSCFVWQEKLLGATKPGEELELLLTQLHDIARRVAKVQL
ECKVQIDVENFVSSFRCDIMQAVYDWAKGSKFSTIMQFAQVFEGSLIRAIRRLEEVLQQL
IQAAKSIGETHLEAKFEEAITKIKRDIVFAASLYL
NT seq 2988 nt   +upstreamnt  +downstreamnt
atggagtctttgaagaggaagtcattggagggcacaatggaggataccgagtctccgcca
ctgaaacaacatagagagaatgatttggtaggtttggatggctctgtcgcatgtgtgcac
gatgtgtcatatcctcaagggtacgtgcctcgtgtgttaaattccaccatggcaacccaa
gaagatgcaaaaccagctaaggagtttccattcaagcttgacccttttcagtccgaagcc
atcagatgcatccaccatggcgagtcagtcatggtctcagcgcacacatctgcgggtaag
acagttgtggcattatatgctattgccatgtcgctgcagaacaagcaacgtgttatatat
acatcaccaatcaaagctctcagcaaccagaagtacagagagttcaaagaagagtattca
gatgtggggttgatgacaggtgatgtcacaattgatcccaacgcctcttgcttggtgatg
acaacagagatctggcgaagcatgcagtacaaaggatcggaggttataagggaggtggcg
tggattatttttgatgaggtgcattacatgcgagacagagagagaggtgttgtatgggaa
gagagtattgtaatggccccaaagaactctagatttgttttcctctctgctacagtgccc
aatgcaaaggagtttgctgattgggttgcaaaggtccaccagcaaccatgtcatattgtt
tatactgattaccgaccaacaccccttcaacattatatcttcccttcggggggcagtggt
ctgtatttagctgttgatgaaaaaggaaagtttcgagaggatagctttcagaaagcttta
aatgcgctctctcccatcactgaaggtgacagaaaaagagagaatggaaaatggcagaaa
gggttagttgttggtaaagcaggcgaggatagtgacatatttaaaatggtgaaaatgatt
attcagcgtcagtatgatccagtcatatgtttcagcttcagcaaaatggaatgtgaatca
cttgccatgcagatggctaaaatggatctaaacgatgacaatgagaaagtgaacgttgaa
accattttctggagtgccatggacatgctatcagatgatgataagaagttgcctcaggta
tcaaatttgctgcctatattaaaacgaggaatcggcgtgcatcattctggattacttccc
atactgaaggaagtcattgaaatcctattccaggaaggattcatcaagtgtttatttgcc
acagagaccttcagcataggattgaacatgccagcaaaaactgtcgtcttcactaatgtt
cgcaaatttgatggcaataaatttagatggatatccagcggagagtacatacagatgagt
ggtcgggctggtcgtcgaggaattgatgaacgtggtatctgcattctcatggttgatgag
aagctagaaccttctacagctaaaatgatgttaaaaggaagtgctgatcctttgaatagc
gcatttcatttaagctacaacatgcttctgaatcaaattcgatctgaagatggtgatcct
gaaaatttactccgtaattcattttatcaatttcaagcagaccgagctattcctgatctt
gagaaacaagcaaaagttcttgaagaggaaagggattcaattataattgaagaagaagat
agcttggaaaattattactctctgctacaacaatataaaattttgaagaaggatgtccgt
gatattgtattctctccaaaatactgtttaccctttctacagccaggaaggcttgtatgc
attcaatgtacaaagaatgatgagtcttcctcatcattctcaatcaaggatgaggtcaca
tggggggttataatcaattttgaaagggttacagggctttctgaagatgatgtgaataaa
aaggcagaggatgcgaactatacagtggacgttctcacgagatgtagagtgcataaagac
gaagtggctaaaaaaataatcaagatcgtcccactgaaggaccctggagaaccagctgtt
atttctgttcctatttcgcagattgacagtttaagtagtgttcggttaataataccaaaa
gatcttttgccattggaagctcgagaaaatacactcaagaaagtgtctgaagttctctcc
agatttgcaaaaggaggcttacctctcttagatcctgaagatgacatgaaagttcaaagc
ggctcatttaagaaggcagtacgaaggatagaagccttggagaacctgtttgaaaagcat
gaaattgcaaagtctctgctgattgagcaaaagctcacagttctgcacaaaaaaaaggaa
cttacagccaaaatcaaatcaataaggaaaacaatgcgttcttcatcagccttggctttc
aaagatgaactgaaagcaaggaaaagagtactgaggagactcggatacattacaagtgat
gatgttgtggagttaaaggggaaagttgcatgtgaaatcagcagtgcagatgaattaaca
ctgaccgagctcatgtttagtggggttttgaaggacatgaaggtggaggagatggtagca
cttctttcatgttttgtatggcaagaaaagcttctgggtgctacaaagcctggagaggaa
cttgagttacttttgactcaacttcatgatatagctcggagagttgctaaagttcagctt
gagtgcaaggttcagattgatgttgagaatttcgtaagttctttcagatgtgatatcatg
caggctgtgtatgactgggccaagggatccaaattttccacaatcatgcaatttgcacag
gttttcgaaggcagcttgatcagggcaatccggagactggaggaagttcttcagcagcta
atacaagcagcgaaatccattggtgagacacaccttgaagcgaaatttgaagaggccatc
accaaaatcaagagggatatagtctttgcagcatctttgtacttatag

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (8)   
   Pfam (8)   
All databases (38)   

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