KEGG T00093: OB0006

Oceanobacillus iheyensis: OB0006

Entry

OB0006            CDS       T00093

Symbol

gyrB

Name

(GenBank) DNA gyrase subunit B

K02470

DNA gyrase subunit B [EC:5.6.2.2]

Organism

oih Oceanobacillus iheyensis

Brite

KEGG Orthology (KO) [BR:oih00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:oih03032]
    OB0006 (gyrB)
   03400 DNA repair and recombination proteins [BR:oih03400]
    OB0006 (gyrB)
Enzymes [BR:oih01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     OB0006 (gyrB)
DNA replication proteins [BR:oih03032]
Prokaryotic type
  DNA Topoisomerases
   OB0006 (gyrB)
DNA repair and recombination proteins [BR:oih03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      OB0006 (gyrB)

SSDB

Motif

Pfam:

DNA_gyraseB DNA_gyraseB_C Toprim HATPase_c HATPase_c_3

Other DBs

NCBI-ProteinID:

BAC11962

JAMSTEC:

OB0006

UniProt:

Q8EU83

Position

5109..7034

AA seq 641 aa
MSMEDKITENQEYGADQIQVLEGLEAVRKRPGMYIGSTSEKGLHHLVWEIVDNSIDEALA
GYCDHIQVVVEEDNSITVKDNGRGIPVDIQQKTGRPALEVIMTVLHAGGKFGGGGYKVSG
GLHGVGASVVNALSSELEVYVHRDGKVHFLSFKKGVPDGEIKVIGDTDITGTVTHFRPDT
EIFTETTEYNFDTLEQRLRELAFLNKGLKISIEDKRTDREQVTYHYEGGISSYVEFINKN
KEVLHEPFFAEGEDQGISVEVAIQYNDGFASNLYSFANNIHTYEGGSHEVGFRSGLTRII
NDYAKKNGLIKDGDSNLSGDDVREGMTTIVSIKHPDPQFEGQTKTKLGNSEVRAITDGVF
SEAFSKFLYENPSTAKIIVEKGLMASRARLAAKKARELTRRKSNLEISNLPGKLADCSSR
DAAISELYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARLDRILSNNEVRAMITA
LGSGVGEEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRYMRPLIEQGYIYIAQPPL
YQVKQGKTVNYAYNDKELDRILNEIPKAPKPNIQRYKGLGEMNADQLWDTTMDPDTRTLL
QVELSDAIDADQVFDMLMGDKVEPRRIFIEENAQYVKNLDI

NT seq 1926 nt +upstreamnt +downstreamnt
atgtctatggaagataaaattacggaaaaccaagaatatggtgcagatcagatacaagtt
cttgaaggattagaagcagttagaaaaagacctggtatgtatattggctctactagtgaa
aaagggcttcatcacttagtctgggaaattgtcgataatagtatcgatgaagcattagca
ggttattgtgaccatattcaagtagtggttgaagaagataatagtattacagtaaaggat
aatggacgtggtattccagttgatatccaacaaaaaactggaagacccgcacttgaagta
attatgactgtactacatgctggcggaaaattcggtggaggcggttataaggtttctggc
ggattacacggtgtaggggcatcggttgtaaatgcactttctagtgaattagaagtgtat
gtacatcgtgatgggaaagttcatttcctgtcgttcaaaaaaggtgttccagatggagaa
attaaggtgattggagataccgatattactggtactgtaactcactttagaccagataca
gaaatcttcacagaaacaacagaatataactttgatacattggaacaacgtcttcgtgag
cttgcatttttaaataaaggattaaaaatttctatcgaagataaacgtacggatagagaa
caagtgacgtaccactatgaaggcggtataagttcttatgttgaatttattaataaaaat
aaagaagttcttcatgagcccttctttgcagaaggagaagaccaagggatctctgtagaa
gtagctattcaatacaatgatggatttgcaagcaatttatactcattcgcgaataatatc
catacgtatgaaggtggatcacatgaagtcggattccgtagcggtttgacacgtataata
aatgattatgcaaagaaaaacggtttaattaaggatggagattctaatctttccggtgac
gatgttcgtgaaggaatgacaacaatcgtatctatcaaacatccagatccacaatttgaa
ggacaaacaaagacgaaactcggtaatagtgaagttcgtgcaataacagatggagtcttt
tctgaagcattttctaagtttttatatgaaaatccttccacagcaaaaattattgtcgaa
aaaggattgatggcgtcacgagcacggcttgcagctaaaaaagcaagagaacttacacgt
cgtaaaagtaacttagagatttctaatttacctggtaagttagctgactgttcttcacga
gatgccgctataagtgaactatatattgtagagggggactcagctggaggttctgcaaaa
tccggtagggatcgccatttccaagcaatcctcccactaagaggtaagattttaaacgtg
gaaaaagcacgcttggaccgtattttatctaataatgaagtacgagctatgataacagcg
ctaggaagcggtgttggcgaagaattcgatattagtaaagcacgatatcacaaaatcgtt
atcatgacggatgctgacgtagatggtgcgcatattcgaacattgctattaacgttcttc
taccgatatatgcgtccactgattgaacaaggctatatttacatcgcgcaaccaccactt
tatcaagtgaagcaaggaaaaacggtgaattatgcgtataacgataaagaattggatcgg
atattaaatgaaattcctaaagcaccaaaacctaatattcagcgatacaaaggtttagga
gaaatgaacgcagatcaattatgggatacaacaatggaccctgatactcgtacactcctg
caagtagaattaagcgatgcaatcgatgctgaccaagtattcgatatgttaatgggagat
aaagtagagccacgtcgaatctttatcgaagaaaatgcacaatatgtgaagaacttagac
atttaa

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   JAMSTEC (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (23)   

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