KEGG   Oceanobacillus iheyensis: OB1546
Entry
OB1546            CDS       T00093                                 
Symbol
topA
Name
(GenBank) DNA topoisomerase I
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
oih  Oceanobacillus iheyensis
Brite
KEGG Orthology (KO) [BR:oih00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:oih03032]
    OB1546 (topA)
   03400 DNA repair and recombination proteins [BR:oih03400]
    OB1546 (topA)
Enzymes [BR:oih01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     OB1546 (topA)
DNA replication proteins [BR:oih03032]
 Prokaryotic type
  DNA Topoisomerases
   OB1546 (topA)
DNA repair and recombination proteins [BR:oih03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      OB1546 (topA)
SSDB
Motif
Pfam: Topoisom_bac zf-C4_Topoisom Toprim RNA_POL_M_15KD Toprim_4 HypA DNA_RNApol_7kD
Other DBs
NCBI-ProteinID: BAC13502
JAMSTEC: OB1546
UniProt: Q8EQY8
Position
1588748..1590826
AA seq 692 aa
MSDYLVIVESPAKAKTIERYLGKKYTVKASMGHIRDLPKSQTGVDVENNFTPKYITIRGK
GDVLKELRKAAKKAKKIYLAADPDREGEAIAWHLAYILGVDPSSNCRVVFNEITKEAIKE
SFKHPRAIDLDLVDAQQARRVLDRLVGYNISPLLWKKVKKGLSAGRVQSVALKMIIDREK
EIQNFKPEEYWSIDAKFQKDKEIFDGSFYGINGKKVALKNEQDVKDIKQQLNGKKFAVDK
VKKRERKKNPALPFTTSSLQQEAARKLNFRAKKTMMIAQQLYEGIDLGKKSGGITGLITY
MRTDSTRISNTAKDEAKNYIVDNYGEKYLGKQASTKNKEGAQDAHEAIRPTSALRDPKNL
KNILSRDQFRLYKLIWERFVASQMAPAVMDTMTVHLLNNNIEFRATGSKIKFKGFMKVYV
EGNDDNKKTEDKLLPELEEGMEVDSKEIKPNQHFTQPPPRYTDARLVRTMEEIGIGRPST
YAPTLDTIQRRGYVTMDNKRFIPTELGEIKCDLMIEFFPEVVDADFTAKMEDDLDSIEEG
NIEWKQIIDSFYKDFKVRLDKAEDEMEKVEIKDEPAGIDCENCGHEMVYKMGRYGKFLAC
SNFPECRNTKPILKEIGVDCPKCEEGNVVERKSKKKRTFYGCDRFPECDFVSWDKPIARK
CPKCESMLVEKKNKKETQVQCTNCEYKEVAQT
NT seq 2079 nt   +upstreamnt  +downstreamnt
atgtcagattatttagttatcgttgaatcacctgcaaaagcaaaaacgattgaacgatat
ttagggaaaaaatataccgtaaaggcttccatgggtcacattcgtgatttacctaaaagt
caaacgggtgtagacgttgaaaataatttcactccgaaatatataaccattcgtggtaag
ggtgatgttcttaaagaattacgaaaagcagcaaaaaaagcaaaaaaaatctatcttgct
gccgacccggatagagaaggggaagcgattgcttggcatcttgcatatattttaggtgtc
gatccatcttcaaattgtcgtgttgtttttaatgaaattaccaaagaggcaattaaagag
tcattcaaacatccacgagcaattgacctagatttagtagatgctcaacaagctagaaga
gtccttgatcgattggttggatataatattagtcctttattatggaaaaaagtgaaaaaa
ggattaagcgcaggaagagtacaatctgttgctttgaagatgattatagatcgagaaaaa
gaaatacaaaatttcaaaccagaagaatattggtctatagatgcaaaattccaaaaggat
aaagaaatttttgacggatctttttatggaataaacggaaaaaaagtagcattaaaaaac
gaacaagatgtaaaagatatcaagcaacaattaaacgggaagaaatttgcagtggataag
gttaagaaaagggaaagaaagaaaaatcctgccttacccttcactacttcatctcttcaa
caagaagctgctagaaagttaaacttccgtgcgaagaagacgatgatgattgctcaacag
ctttatgaaggtattgacctagggaaaaaatccggggggattactggtttaatcacatat
atgcgtactgattctactcgtatatccaatacagcaaaagatgaagcgaaaaactacatt
gtagataattatggtgagaagtatctaggtaagcaagcatcaacgaagaataaagaagga
gcacaagatgctcatgaggcaattcgcccaacttctgcgttaagagatccgaaaaactta
aagaatattttatcgagagatcaattccgattatataaattgatatgggaacggtttgta
gcaagtcaaatggctccggcagtaatggatacgatgaccgttcatttattaaataataat
atcgaatttcgagcaactggctcaaaaattaagtttaaaggattcatgaaagtttatgtg
gaaggtaatgatgataacaagaaaacggaagataagttattacctgaattagaagagggt
atggaagtagattcaaaagaaattaaaccgaatcagcattttacacagccacctccacga
tatacagacgcacgtcttgtgcgaacgatggaagaaataggtattggaagaccgtctact
tatgcacctacactagatacgattcaacgtaggggttatgtaacgatggataataagcgt
ttcattccgactgagcttggcgaaattaaatgtgatctcatgattgaatttttccctgaa
gtagttgacgcagatttcactgcaaaaatggaagatgatttagactctattgaagaaggg
aatatagagtggaaacaaattattgatagcttttataaagatttcaaagtaagactggat
aaggcagaagacgagatggaaaaagttgaaataaaagatgaaccagcagggattgattgt
gagaattgcggtcatgaaatggtttataagatggggagatatggtaaattcctcgcttgt
tcaaactttccggaatgtcgcaatacaaaaccgatcttaaaagaaattggtgttgattgc
ccgaaatgcgaagaaggcaatgtggttgaacgaaaatcaaagaaaaaacgaacattctat
ggttgtgatcgcttccctgaatgtgactttgtttcctgggacaaacccattgctagaaaa
tgtccaaaatgtgaatctatgttagtagagaaaaagaataaaaaagaaactcaagtacag
tgtacaaattgtgaatataaagaagtagcccagacttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (20)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   JAMSTEC (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (34)   

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