KEGG   Oryzias latipes (Japanese medaka): 101157441
Entry
101157441         CDS       T02443                                 
Symbol
papd5
Name
(RefSeq) non-canonical poly(A) RNA polymerase PAPD5
  KO
K03514  non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
Organism
ola  Oryzias latipes (Japanese medaka)
Pathway
ola03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ola00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    101157441 (papd5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ola03019]
    101157441 (papd5)
   03016 Transfer RNA biogenesis [BR:ola03016]
    101157441 (papd5)
Enzymes [BR:ola01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.19  polynucleotide adenylyltransferase
     101157441 (papd5)
Messenger RNA biogenesis [BR:ola03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     101157441 (papd5)
Transfer RNA biogenesis [BR:ola03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    101157441 (papd5)
SSDB
Motif
Pfam: PAP_assoc NTP_transf_2 Polbeta PAP_NTPase TUTase
Other DBs
NCBI-GeneID: 101157441
NCBI-ProteinID: XP_004067543
UniProt: H2MG09
Position
3:complement(30427701..30447627)
AA seq 679 aa
MDPRIAWFQPEQLGPANNLWMQIWETTQGFGYLYVNNCYTAGPQNTSSLKTAVNGWLGAA
LSTSRNGSTLDSSTAAGEAKTQVMSVSTGDGDVTEQRDFIPLDSQSNRNNRGGVVGEGGH
QQQGCGVTVLYRGHADGHPNKRKRENKASTYGFNSSLLNNFNSGGHEAYTGTPWKTRNYA
DTVVGLHEEIKDFYDYISPRPEEEKMRLEVVDRIKGVIHDLWPSAEVQVFGSFSTGLYLP
TSDIDLVVFGKWETLPLWTLEEALRKRNVADKSAIKVLDKATVPIIKLTDSVTEVKVDIS
FNVESGVKAARLIKEFKEKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFL
QLHFREDVCSPNINIGVLLIEFFELYGRHFNYLKTGIRIKDGGSYVAKDEVQKNMMDGYR
PSMLYIEDPLQPDNDVGRSSYGAMQVKQAFEYAFVVLHHAVSQIAKCYPNNESESILGRI
IRVTKEVDEYREWIRNNWGNSSQIDLPLNKNDVKLLDPQQLDERNNNVPDDEVVVVLPLA
PRSKTFSNTSSPPPSLRSSHSSSPLSPPSTSPTSTSSDADSDGTPCKTAKQQPGRGPGTL
REKPAVATNHRTQNQSTITPTTGNKGGKARMSRAHHNNGHQGQQNSTKTTNNPKNKLVHQ
GNSKKRKNVRDSTQEDLYR
NT seq 2040 nt   +upstreamnt  +downstreamnt
atggatccgagaattgcctggtttcagccagaacaacttggacccgctaacaacctgtgg
atgcagatttgggagacgacacaagggttcgggtacctttatgtaaataactgctacacc
gctggacctcagaacacttcgagtttgaaaacggccgtgaacgggtggctgggagccgca
ctatctactagcagaaacggtagtacgctcgactcaagcaccgctgccggggaagccaag
actcaggtgatgtctgtctctacgggggatggagacgtaactgaacagcgggactttata
cctctggactcccaaagcaaccgcaacaacaggggcggtgtcgtcggtgaaggagggcat
cagcagcagggctgtggggtcacagtgttgtataggggccacgcggacggacatcccaac
aaaagaaaaagggaaaataaagctagcacgtatggatttaattccagcttattgaacaac
ttcaactctggaggacatgaagcttacactggcacgccatggaagaccaggaactacgcg
gacacagttgtagggttacatgaggagatcaaggatttctatgactacatttctccacgg
ccggaggaagagaagatgagattggaggtggtagaccgaatcaaaggagtaatccacgat
ctgtggcccagcgccgaggttcaggtgtttgggagtttcagcactggtctttatctgcca
acaagtgacattgacctggtagttttcggtaagtgggagactctcccgctttggacgttg
gaagaggctcttcggaagagaaatgttgcggataagagcgcgattaaggtcttggataaa
gcaacggttcccatcattaaactgactgactctgtcactgaagtcaaagtggacatcagc
ttcaacgtggaaagtggcgtcaaagctgctcggctcatcaaggaattcaaagagaagtac
cccgtgttgccttacctggttctggtgctgaagcagtttcttctacaaagagaccttaat
gaggtttttaccgggggcatcggctcctacagtctctttctcatggctgtcagcttcctg
cagcttcacttcagggaggacgtgtgcagccccaacatcaacatcggtgtgctgctgatt
gaattcttcgaactgtacggtcgccacttcaactacctgaaaacgggcatccggataaaa
gacggcggttcttatgtggccaaagatgaggtccagaagaacatgatggatggatacagg
ccgtctatgctctacattgaggaccctctgcagccagacaatgatgtcggcaggagctcc
tacggtgccatgcaggtgaagcaggcctttgaatacgcctttgtggtgctccaccatgct
gtatcacagattgccaagtgctatcccaataacgaaagtgagagcatacttggccggata
atccgggtgaccaaggaagtggacgagtacagggaatggatccgaaataactggggcaac
tcatcgcagattgatctgcctcttaataaaaacgatgtgaagctgttggatccccagcag
ctggatgagcgcaacaacaacgttccagacgacgaggtggttgttgttctgccactagct
cctcgcagcaaaacgttctccaacacgtcgtctccacccccctccctgcgttcgtctcac
tcctcctcccctctgtccccgccatccacgtccccaacgtctacctccagcgatgcggac
tctgacggcacaccgtgtaagacggccaagcagcagcccggtcgaggccctggcactctc
agagaaaagccggctgtggccactaatcaccgcacacagaatcaatctaccatcactcca
accacaggcaacaaaggaggaaaggcccggatgtctcgtgcccaccacaataatggtcac
caagggcagcagaactcaaccaaaaccacaaataatcctaaaaacaagctggttcaccag
ggcaatagcaagaagaggaaaaatgtacgggactccacacaagaggatctctacagatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (21)   
   KEGG ORTHOLOGY (1)   
   RefGene (17)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (36)   

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