KEGG   Oryzias latipes (Japanese medaka): 101162145
Entry
101162145         CDS       T02443                                 
Symbol
ddx54
Name
(RefSeq) ATP-dependent RNA helicase DDX54
  KO
K14808  ATP-dependent RNA helicase DDX54/DBP10 [EC:3.6.4.13]
Organism
ola  Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:ola00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:ola03009]
    101162145 (ddx54)
Ribosome biogenesis [BR:ola03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    101162145 (ddx54)
SSDB
Motif
Pfam: DEAD Helicase_C DBP10CT DNA_pol3_chi
Other DBs
NCBI-GeneID: 101162145
NCBI-ProteinID: XP_004074815
UniProt: H2LT40
Position
12:complement(12761142..12768568)
AA seq 852 aa
MAQRKKKLTKKKRHHPANREPESESDGDFELAAEVKDDESPGRKLLRFPSTADCTSDVEP
DTRELVRAQNKKKKKSGGFQSMGLSYPVYKGVMKKGYKVPTPIQRKTIPVILDGKDVVAM
ARTGSGKTAAFLVPMFEKLKAPQASAGARALIMSPTRELALQTMKFTKELGKFAGLKTAL
ILGGDRMEDQFAALHENPDIIIGTPGRLMHVVKEMNLKLHSVEYVVFDEADRLFEMGFAE
QLQEIIQRLPDTRQTLLFSATLPKLLVEFARAGLTEPVLIRLDVDSKLSDQIKLSFFHLR
VDDKPAMLLHLLKNVAKPQEQTVVFVATKHHVEYLRELLSSEGIECAYIYSALDQTARKI
NIGKFVHRKAMVLIVTDVAARGIDIPMLDIVINYNFPSKPKLFLHRVGRVGRAGRSGTTY
SLICPDEMPFLYDLHLFLGRPVQFATLDHTQECDGVLGRVPQNILDDEGSNLITAHENSL
DLQNLHRVSENAYKQYLKSRPNPSAESIRRVKNLDLSCMAVHPFLGCGLEKMELERLQIV
DAIKGYKSKSTIFEINSNSKTTASEVMRAKRSKDTPLMDKFSKRKEDLAAENKPQLVVAS
ANNGDSTQGADEEEEDLKGVFSEVLGGKRKGPQKHEEHLQNKRRKQTGKDEEYYIPYRPK
DFNSEKGLSLGGEGSNFEQQASSAVLDLMGDDSNQLNQHKKIMKWDRKRKRFVTETRKED
HKKKIKTENNRVVVNKKNRKNFYEEWKKKYKVDDADSGSEGETGGGAGGRGRGRRGPTSR
RTSAGSGGRRVRSELKTSAQILKQRKIKDKQKFLQGGGMKKIRAKNKKWVGEVKKAGFGR
GSQKKGKLKKRL
NT seq 2559 nt   +upstreamnt  +downstreamnt
atggctcagcgaaagaagaaacttacgaagaaaaagagacaccatccagctaacagagaa
ccggagtctgaatctgacggagacttcgagctggcagctgaagttaaagacgatgaatct
cctgggaggaagctgctgcggttcccgtctactgcagactgcacatcagatgtggagccg
gacaccagggagctggttagagcccagaacaagaagaaaaagaaatctgggggctttcag
tccatgggcctgagctatcctgtttataaaggtgtcatgaaaaaaggttacaaagttcct
acacccattcaaagaaagactatcccggtgattttggatgggaaggatgtggtagccatg
gctaggacaggcagtgggaaaactgctgcctttcttgtgcccatgtttgaaaaactgaag
gcccctcaagcctcagcaggagccagggccctcattatgtcccctaccagggagttggcc
ctacagacgatgaagttcacgaaagagttgggaaagtttgctggcctcaagactgctttg
attctgggtggagacagaatggaggatcaatttgctgctcttcatgaaaatcctgacata
atcattggtactcctggtcgtctcatgcacgtggtaaaggaaatgaacctgaagctgcac
agcgtggagtatgtggtcttcgatgaagctgatcggctgtttgaaatgggttttgccgaa
cagcttcaggagatcattcagagactcccagacaccaggcagactctcctgttctctgct
actctccccaaactgttggtggaatttgccagagctgggttgacagaaccggtcctgatt
cgtttggatgtggattctaagctcagcgaccaaatcaagctctccttttttcacttgcgt
gtggacgacaaacccgcaatgctgctacacctcttgaaaaatgtggcaaaaccccaggaa
caaacggtagtctttgtggccaccaagcatcatgttgagtacctcagagagttgctatct
tcagaaggcatcgagtgcgcctacatctacagtgctcttgatcaaactgccaggaagatc
aatattggtaaatttgtgcaccggaaagctatggtgttgatcgtgacagatgttgctgct
cgtggtatagacatacccatgctggacatcgtcatcaactacaacttcccatccaagccc
aagctcttcttgcatagagtcggtcgtgtgggacgtgctggtcgcagtggcaccacctac
agcctgatatgtcctgatgagatgccttttctctatgacctccatctttttcttggaagg
cctgtgcagtttgctacacttgaccacacacaagagtgtgatggcgtgcttggcagagtc
cctcagaacattctggacgatgaaggttccaatctgatcacagctcatgaaaactccctg
gacctacagaatctgcatcgtgtctcggagaacgcatacaagcagtacctcaagtcgagg
cccaacccctctgcagagtccatcagacgagtcaaaaacctggatctgtcctgcatggct
gttcatccgtttctcggttgtggtctggagaaaatggaactcgagcgtcttcaaatagtc
gatgctatcaaaggctacaaatctaaatcaaccatctttgaaatcaactcgaacagtaag
acaactgccagtgaggtgatgcgagcgaaacgctccaaagacacacctttgatggacaaa
ttcagcaaacggaaagaggatctggctgcagagaacaagccgcagctggtcgtcgcctct
gctaataatggcgactctacacagggagcagacgaggaggaggaagatctgaagggtgtg
ttttctgaggttttaggcgggaaaagaaaaggtccacagaaacacgaagagcatctgcag
aacaagagaagaaagcaaacgggcaaagatgaagagtattacatcccttacagaccgaaa
gacttcaactctgagaaaggcttaagcctcggtggagagggcagtaactttgagcaacag
gcttcctctgctgttctggaccttatgggagatgacagtaaccagttaaaccagcacaaa
aaaataatgaaatgggaccggaagcggaagcgctttgtaacagaaacaagaaaagaggac
cacaagaagaaaattaagactgagaacaacagagtcgttgttaacaagaagaacaggaag
aacttttatgaagagtggaagaaaaagtacaaggtggatgatgcagattctggatcagag
ggagaaacaggaggaggagctggaggtcgcggccgaggtcgccggggaccgacctctcgc
aggacctctgcaggatcaggaggtcgcagagtacgctcagagctaaaaacaagtgctcag
atcctaaagcagcgcaaaatcaaagacaagcagaagttcttgcagggcggtgggatgaaa
aaaatccgcgctaagaacaagaagtgggtcggagaggtgaagaaggcaggctttggtcgg
ggcagccaaaagaagggcaagctgaagaagagactgtga

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Ontology (2)   
   KEGG BRITE (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (30)   

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