KEGG   Oryzias latipes (Japanese medaka): 101166407
Entry
101166407         CDS       T02443                                 
Symbol
rfc3
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
ola  Oryzias latipes (Japanese medaka)
Pathway
ola03030  DNA replication
ola03410  Base excision repair
ola03420  Nucleotide excision repair
ola03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ola00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    101166407 (rfc3)
   03410 Base excision repair
    101166407 (rfc3)
   03420 Nucleotide excision repair
    101166407 (rfc3)
   03430 Mismatch repair
    101166407 (rfc3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ola03032]
    101166407 (rfc3)
   03036 Chromosome and associated proteins [BR:ola03036]
    101166407 (rfc3)
   03400 DNA repair and recombination proteins [BR:ola03400]
    101166407 (rfc3)
DNA replication proteins [BR:ola03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    101166407 (rfc3)
  DNA Replication Termination Factors
   ELG1-RFC complex
    101166407 (rfc3)
Chromosome and associated proteins [BR:ola03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    101166407 (rfc3)
DNA repair and recombination proteins [BR:ola03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     101166407 (rfc3)
  Check point factors
   HRAD17(Rad24)-RFC complex
    101166407 (rfc3)
SSDB
Motif
Pfam: DNA_pol3_delta2 Rad17 AAA AAA_22 AAA_16 DNA_pol3_delta AAA_11 ABC_tran ATPase_2 DUF2247 AAA_5
Other DBs
NCBI-GeneID: 101166407
NCBI-ProteinID: XP_004076244
UniProt: H2LF90
Position
14:complement(9960311..9963317)
AA seq 356 aa
MSLWVDKYRPTSLGKLDYHKEQATQLKNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELY
GAGVEKLRIEHHTIVAPSKKKIEINTIASNYHLEVNPSDAGNQDRVVIQELIKTVAQSQQ
IQSSTQREFKVVILTEVDRLTKDAQHALRRTMEKYMSTCRLILCSTSTSKVIGPIRSRCL
AVRVPLPSTEEVCSVLTSVCKKEGLNLPPELAKQISEKSGRNLRKALLMCEACRVQQYPF
SADQEVPETDWEVYLRETANAIVSQQNPQRLLEVRARLYELLTHCIPPEIIMKGLVKELL
SNCDGQLKAEVAHMAAYYEHRLQLGSKAIYHLEAFTAKFMAIYKKFMEDGLDAMMF
NT seq 1071 nt   +upstreamnt  +downstreamnt
atgagtttgtgggtggacaaatatcgaccgacctctctggggaagctcgattatcataaa
gaacaagctactcagctgaaaaacctggttcaatgtggagactttccccacttgttggtg
tacggcccctcaggagctggaaagaaaacccgcatcatgtgtctgctgagggagctgtac
ggagccggggtggagaagctccgcatagagcaccacaccatagtggccccatcaaagaag
aaaattgagatcaacaccattgccagcaactatcacttggaggtcaacccaagtgatgca
ggaaatcaggaccgtgtggtgatccaggagctaattaaaactgtggctcagtcccagcaa
atccagtcaagcacgcagcgagagttcaaagttgtgatactaacagaggtggacagactc
acaaaagatgcccagcatgctttgcgtcgaaccatggagaagtacatgtccacctgtcgt
ctcatcctctgctccacatccacctccaaagtcatcgggccaatcagaagtcgctgtctg
gctgtgagagttcctctgccgagcacagaggaggtttgcagtgttttaacttcagtttgt
aaaaaagagggtctgaatttgccacctgagctggccaaacaaatcagtgaaaaatccggc
cgcaacctgcgcaaagcgcttttgatgtgtgaggcctgcagggtgcagcagtatccgttc
tccgctgatcaggaagtcccagagacagactgggaggtctacctgagggagacggcgaac
gccatcgtcagccagcagaatcctcagaggctgttggaagtccgcgcccggctgtacgag
ctgctgactcactgcatccctcctgaaatcatcatgaagggcctggtgaaggagttgttg
agtaactgtgacggtcagctgaaggcggaggtggcccacatggcagcttattatgaacac
agactccagctgggcagcaaagctatctaccacctggaggcttttaccgccaagttcatg
gccatctacaagaagtttatggaggacggtctggatgctatgatgttttag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (11)   
   Pfam (11)   
All databases (39)   

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