KEGG T02443: 101166712

Oryzias latipes (Japanese medaka): 101166712

Entry

101166712         CDS       T02443

Symbol

chd5

Name

(RefSeq) chromodomain-helicase-DNA-binding protein 5 isoform X1

K14435

chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]

Organism

ola Oryzias latipes (Japanese medaka)

Brite

KEGG Orthology (KO) [BR:ola00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ola03036]
    101166712 (chd5)
Chromosome and associated proteins [BR:ola03036]
Eukaryotic type
  Chromatin remodeling factors
   Other chromatin remodeling factors
    101166712 (chd5)

SSDB

Motif

Pfam:

SNF2-rel_dom CHDCT2 CHDII_SANT-like Helicase_C CHDNT DUF1087 PHD Chromo ResIII HDA2-3 PHD_2 DEAD AAA_22

Other DBs

NCBI-GeneID:

101166712

NCBI-ProteinID:

XP_023811074

Position

5:complement(32167791..32218921)

AA seq 1984 aa
MPGSLSNEEEGQDDMDLEEELPDEDDDGERRTVPLTPLASFFSDEDSLREQKRKKPKKMK
EGKIPKVKKRKKEGGLHIRLDSDPETSEVEDERERPDIGSGSESSTYVTMKKKKKKPREK
KEKKPRKKKRDGEEEEDGNDDGSMKEPKSSGQLMHEWGLEDVQYGFTEDDYKTITNYKAF
SQFLRPLIAKKNPKIPMSKMMTVLGAKWREFSANNPFKGASATAVAAAVAAAVETVTVAQ
PTPVSCSQPTAQQGPLKKAKTKEGKGPGVRKRSKAVKDLKKKAKPKKTKSKSGQSGKKKK
ASSSEEDFLEESDFDDISIHSASVLSDTSGAANKKKARRGRKKRKKEDGDGYETDHQDYC
EVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEAKDEEEDEEEP
VGEEEDDHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCMCPPLKG
KVQKILHWTWGEPPLPAEPPAGPDGKPSDPLSNPPLKGRPEREFFVKWAGLSYWHCSWVS
ELQLELYHTVMYRNYQRKNDMDEPPPYDYGSGEEEINNEKRKSKDPQYAVMEERFYRYGI
KPEWMVMHRILNHSFDRDGDVHYLIKWRDLPYDQCTWEVDDFDVPEYDSHKACYWDHREQ
ILGEDQRPLVVRKGKKLREEHQKREAPPDAPIIDPTIKFEHQPWYINATGGTLHPYQLEG
LNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPFLVSAPLSTIINWERE
FEMWAPDFYVVTYTGDKDSRAIIRENEFTFEDSAVKSGRKVFRMKKDTPIKFHVLLTSYE
LITIDQAILGSISWACLVVDEAHRLKNNQSKFFRILNGYKIYYKLLLTGTPLQNNLEELF
HLLNFLTPDRFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELI
VRVELSPMQKKYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAP
VLPNGSYDGNLLVKSSGKLTLLQKMLKKLKDEGHRVLIFSQMTKMLDLLEDFLEFEGYKY
ERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLASADTVIIYDSDWNPHND
IQAFSRAHRIGQNKKVMIYRFVTRGSVEERITQVAKRKMMLTHLVVRPGLGSKTGSMSKQ
ELDDILKFGTEELFKDEMEAARTMGDNKDGEEGSVIHYDDDAISKLLDRSQDATEDTDIQ
NMNEYLSSFKVAQYVVKEEDGEEEVEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNL
GKGKRIRKQVNYNDTTQEDQEWQDDLSDNQSEYSVGSEDEDEDFEERPEGGRRQSRRQLK
NEKDKPLPPLLARVGGSIEVLGFNARQRKAFLNAIMRWGMPPQDAFNSHWLVRDLRGKSE
REFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLVRKKVQEFEHVN
GKLSSPDLIPIGIELKKLTESVSSDPNTPAPASPAATRPGTPIPQEKTESLMGGCEDKET
TEQDGRKGPEQEVTEPEPVPDKASDGEDKAVIDDKTSDDRSRTEPPPTKPEPTETPPAHP
APKADSKEIVKPSEKRDSASPPDKNEDKENKPDEAKSDEPLESRLNGDRDTLEETEDSRK
EDRNGFKAKFMFNIADGGFTELHTLWQTEERAATSSPKMHDIWHRRHDYWLLAGIVTHGY
ARWQDIQNDPRYAILNEPFKSEMHKGNYLEMKNKFLARRFKLLEQALVIEEQLRRAAYLN
MTQDPSHPAMALNTRFTEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKA
DVTRLPNMLSRIPPVSARLQMSERSILSRLTSRGGEPPPQQTFGQGGFACSQMYGGGFAA
GFRGPGGQPMVNYSQMPLGPYVSVSNGTALPTSHLDKKSLDSLRDVGTPDLKSGKPTDVI
CIED

NT seq 5955 nt +upstreamnt +downstreamnt
atgccggggtcgctgagcaatgaagaggagggacaggacgacatggatttggaagaggag
ctgccagatgaggatgatgatggcgagcgccgcaccgtccccctcacaccccttgccagc
ttcttctccgatgaagactccctcagagaacagaagaggaagaagcccaaaaagatgaaa
gaggggaaaatacccaaagtgaaaaagaggaagaaagagggaggactccacatccgactg
gacagtgacccggagacgtcggaggtggaggatgagcgggagcgcccggacattggctcc
gggagtgagagcagtacgtacgtcaccatgaagaagaagaagaagaaacccagggagaag
aaagagaagaagcccaggaaaaagaagagggacggggaggaagaggaagacggcaatgat
gacgggagcatgaaagaacccaaatcctccggccagctgatgcatgaatggggtcttgaa
gatgttcagtacggcttcacagaggacgactataaaaccatcaccaactacaaggctttc
agccagttcctgaggcctctcattgccaagaagaacccgaagatccccatgtcaaagatg
atgactgtgctgggggccaaatggagagagttcagcgccaacaacccgttcaagggcgca
tccgccaccgctgtggctgccgctgtggccgccgccgtggaaaccgtcaccgtggctcag
cccacgcccgtcagctgcagccagcccactgctcagcaaggtccattaaaaaaagccaaa
accaaagagggaaagggacccggggtccggaagaggagcaaggccgtgaaggatctgaag
aaaaaagccaagcccaaaaagaccaaatcaaagtcaggccaaagcgggaagaagaagaag
gcgtcttcgagcgaggaggactttctggaggagtcggactttgacgacatcagcatccac
agtgcctctgtgctttctgacacctccggggcggcaaacaagaaaaaggcccggcgtggg
cgcaagaaaaggaaaaaggaggacggcgacggctacgagacagaccaccaggactactgc
gaggtctgccagcagggcggagaaatcatcctgtgtgacacctgtccgagagcctaccac
ctggtgtgtctggaccctgagctggagaaggcccccgagggcaagtggagctgtccccac
tgtgaaaaggagggaatccagtgggaggccaaggatgaggaggaggacgaggaggagccg
gtgggcgaggaagaggacgaccacatggagttttgcagagtttgcaaggatggaggggag
ctgctgtgctgcgacacctgtccgtcatcctaccacatccactgcctcaacccgcccctc
cctgagatccccaacggggagtggttatgtccccgctgcatgtgtccccctctcaaagga
aaggtccagaagattttgcattggacgtggggggagcccccgctgccggccgagccgccg
gcaggacctgacggaaagccgtccgaccccctgagcaaccccccgctgaaaggccgcccg
gagagggagttctttgtgaagtgggcggggctgtcgtactggcactgctcctgggtcagc
gagctgcagctggagctgtaccacaccgtcatgtaccgcaactatcagaggaagaatgac
atggacgagccccccccatacgactacggctccggggaggaggagatcaacaacgagaag
aggaaaagcaaagacccccagtacgcggtgatggaggagcgcttctaccgctacggcatc
aaacccgagtggatggtcatgcaccggatactcaaccacagttttgatcgggacggtgat
gtgcactacttgatcaagtggagggacctgccgtatgaccagtgcacgtgggaggtggat
gatttcgacgtcccggagtacgacagccataaagcttgttactgggaccacagggagcag
atcttaggcgaggatcaacgcccccttgtggtgaggaaagggaaaaagctacgagaggaa
catcagaagagagaagctccccctgatgctcccatcatagatcccaccatcaagtttgag
caccagccctggtacattaatgccaccggagggacgctgcacccgtaccagctggaaggc
ctgaactggttgaggttctcgtgggctcaggggaccgataccatcctggctgatgagatg
ggtctgggaaagacggtgcagacaattgtgtttctctactcgctgtacaaagagggtcac
tctaaagggccgtttttggtcagcgcccctttgtccaccatcatcaactgggagagagag
tttgagatgtgggctccagacttctatgtggtgacgtacaccggagacaaagacagccgg
gcgatcatcagggagaacgagttcacctttgaggacagcgccgtcaagtctggacgcaaa
gtgtttcggatgaagaaagacactcccatcaagttccacgttctgctcacgtcctacgag
ctgatcaccatcgatcaggccatcctgggctccatctcgtgggcctgcttggttgtagac
gaggcgcacagactgaaaaacaaccaatcaaagtttttcagaatcctcaacgggtataag
atttactacaagctgctcctcaccgggactcctcttcagaacaatctggaggagctgttc
catctgctgaacttcctcacccccgatcgcttcaacaacttggagggcttcctagaagag
tttgcagacatctcaaaggaggaccagatcaagaagctccacgacctgctgggcccacac
atgctcaggaggctgaaagccgacgtcttcaagaacatgcctgcaaagacggagctgatc
gtccgggtggagctcagtcccatgcagaagaagtattataagttcatcctgacccggaat
ttcgaggccctgaactccaaaggtggagggaaccaggtgtctcttctcaacatcatgatg
gatctgaagaagtgctgcaaccacccgtacctgtttcctgttgctgctgtggaagctcct
gtgctccccaacggctcctacgacggcaacctgctggtgaagtcgtcgggaaagctgacg
ctgctgcagaaaatgctgaagaagctcaaagacgaaggtcacagagttctgatcttctcc
cagatgaccaagatgctggatctgctggaggatttcctggagtttgaaggttataaatat
gagcgtatcgatggggggatcactggaggcctgaggcaggaggccatagaccgcttcaac
gctccgggcgcgcagcagttctgcttcctgctttccacgcgggcggggggtctgggcatc
aacctggcgagtgcagacaccgtcatcatctacgactcggactggaacccgcacaacgac
atccaggctttcagcagagcgcatcgcattggccagaacaagaaggtgatgatctatcgc
tttgtgactcggggctccgtggaggagagaatcactcaggtggcgaagaggaaaatgatg
ctgacccacctggtggtgaggcccggcctgggctccaaaacgggctccatgtccaaacag
gagctggacgacatcctcaagtttggaaccgaggagctgttcaaggatgaaatggaggcg
gctcgaaccatgggcgataacaaagacggagaggagggcagcgtcatccactacgacgac
gacgccatctccaagctgctggaccgcagtcaggacgccaccgaggacacggacattcag
aacatgaacgagtacctgagctccttcaaggtggcccagtacgtggtgaaggaagaggac
ggagaggaggaggtggagagggagatcatcaaacaggaggagaacgtggaccccgactac
tgggagaagctcctgcggcatcactacgagcagcagcaggaggatctggcccggaatctg
ggcaaaggcaaacgcatccgcaaacaggtcaactacaacgacaccacccaggaggaccaa
gaatggcaggatgatctttcagacaatcagtcggagtactccgtggggtccgaggacgag
gacgaagacttcgaggagcgacctgaagggggacgcagacagtctcgccggcagctgaag
aacgagaaagacaaacctctgcctccgttactggcccgggttggaggcagcatcgaggtc
ctggggttcaacgctcgccagaggaaagccttcctcaatgccatcatgcgctggggcatg
cccccacaggacgccttcaactcgcactggctggtcagggacctgcgagggaagagcgag
cgggagttcagagcctacgtctccctcttcatgagacacctatgcgagccgggcgccgac
ggagcagaaacgttcgccgacggcgtccctcgagagggcctgtcccgtcagcacgttctc
accaggatcggagtcatgtcactggtcaggaagaaggtgcaggagtttgaacacgtaaac
ggtaagctgagttctcctgatctgattcccatcggaatagagctgaagaaactgacggag
agcgtgtcttctgatcccaacactccggcgcccgccagccccgccgccacgcggcccggc
acccccatccctcaagagaagacggagtctttgatggggggctgtgaagacaaggagacg
accgaacaagatggaagaaaagggccggagcaggaagtgacagaaccagaacctgtccct
gataaggcgtctgacggtgaagacaaagctgtcatagacgacaaaaccagcgatgacagg
agcagaaccgagcccccccccacaaaaccggagcccacggaaacgccccccgctcatccc
gccccaaaagcagactccaaagaaatcgtgaaaccctctgagaaaagagactccgcctcc
ccgccagacaaaaatgaagacaaggaaaacaagccagacgaagcgaagagcgacgagccg
ctggagagtcgcctaaacggagacagagacacgctggaggagacggaggacagccgcaag
gaggacaggaacggattcaaggccaagttcatgttcaacatcgctgacggagggtttaca
gagctccacaccctctggcagaccgaggagagagcagccacgtcttcacccaagatgcac
gacatctggcaccgtcgccatgactactggctgctggctggcatcgtaacacacggctac
gcgcgctggcaggacatccagaacgaccctcgctacgccatcctgaacgaacccttcaag
tccgagatgcacaaagggaactacctggagatgaagaacaagtttctggctcgccgcttc
aagttgttggagcaggctctggtgatcgaggagcagttaaggagggccgcgtatctgaac
atgacccaggaccccagccacccagccatggccctcaacacccgcttcactgaggtggag
tgtctggccgagtcccaccaacacctgtccaaggagtctctggccgggaacaagcccgcc
aacgccgtgctccacaaagtgctgaaccagttggaggagctgctgagtgacatgaaggcc
gacgtgacccgactgcccaacatgctgtcccggatcccgcccgtgtcggcgcgcctgcag
atgtccgagaggagcatcctgagccgcctcacaagccggggcggcgaaccccccccgcag
cagacttttggccagggcgggttcgcctgctcacagatgtacggcggcggttttgctgca
ggattcagaggacctggcggacagcccatggttaactacagtcagatgcccttaggacct
tacgtcagcgtgtcaaatggcaccgcactacccacaagccatctggacaagaaatccctg
gactccctgagagacgtgggaactcctgacctgaaatcaggcaaacctaccgatgtcatc
tgcattgaggactag

All links

Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (32)   
   KEGG ORTHOLOGY (1)   
   RefGene (28)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (5)   
   RefSeq(pep) (5)   
DNA sequence (6)   
   RefSeq(nuc) (6)   
Protein domain (13)   
   Pfam (13)   
All databases (59)   

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