KEGG   Oryzias latipes (Japanese medaka): 101168309
Entry
101168309         CDS       T02443                                 
Symbol
dhx34
Name
(RefSeq) probable ATP-dependent RNA helicase DHX34
  KO
K20101  ATP-dependent RNA helicase DHX34 [EC:5.6.2.6]
Organism
ola  Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:ola00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ola03019]
    101168309 (dhx34)
Messenger RNA biogenesis [BR:ola03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Other surveillance factors
     101168309 (dhx34)
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C HA2_C DEAD HA2_N AAA_22 AAA_19
Other DBs
NCBI-GeneID: 101168309
NCBI-ProteinID: XP_011480579
UniProt: H2LAF3
Position
13:complement(5079017..5087753)
AA seq 1151 aa
MDSERGRHSRVWDWDSRQCRAQLDEIFFRQHDYIQAGSPEHREFWAFFDRFQRFKIKREM
SGPAEERREDKKGKKKSVTKTVDLGLPEEYDARYRINVSVCTRDIEERLGKSDHRSRQRS
SGPGPHEISEFRLTLLHFLDFSQRQSFGKLAKLRQEQKNLPIFQYRDRIVELVKQHPVIV
VAGDTGCGKSTQVPQYLLSAGFKHIACTQPRRIACISLAKRVSFESLNQYGSKVGYQIRF
ETTRTTATKLLFLTEGLLLRQIQQDGSLSQYQVMIVDEVHERHLHCDFLLGVLRSLLADR
SDLRLILMSATINIKLFSSYFNDAPVLQVPGRLFPIQVIYQPIPPEEQPSRSEKLDPRPY
LRILQAIDQRYPPEERGDLLLFLSGVAEISTIQEACQIYATHTRRWIVLPLHSTLSLAQQ
DKVFDIAPPGVRKCIISTNIAETSVTIDGVRFVVDSGKVKEMSFDPKAKMQRLQEFWISR
ASSEQRKGRAGRTGPGLCYRLYAESDYDAFAPYPVPEIHRVALDSLILQMKSMGLGDPLT
FAFIDPPPTASIQTAVTYLKQQGALDSCGELTSIGSLLAQLPVDVVIGKMLVLGSVFNLV
EPVLTVAAALSVQSPFLRSSQHNPDCSTARQPLQSNQGDPFTLLNTFNAWVEVKGERGGG
SRKWCRRRGLEEQRLYEMVNLRRQFKELLKSHSLLESQESAPSGGDREQRRKRFTEKKKL
HQMKREHELQEGSKRKVLKMNEGQEGEFSSGSDMEEKGKRKKEKDGAGHDLDIQEVKFKL
RHNVSELQEAVNASQDLSSRQQALLKLLLCRGLYPQLAVADEHNTTRKDSDQVFHTRNKQ
GVVIHPTSVFASDPEVLHVPEEDIRETGADGKESSKHQLLAFVTLLETNKPYLSNCVRAP
ALQALLLVANSVDTNADCTRMVVDGWLELELREPEEALRVLSTALKLRAEWERLLQVQLG
QSSSGGEAVQGVSRKDVGKLSDSLVRFLLYTEIRYTLRRLTALKTQNLYVGPQPETDLSD
TKALVLNPLFPGAETKPDPIKGGLRLTSSFTYNCLADSKNLYSECLRTFWTCPNCSLYMP
LSPLERMHHEASCRPAGEQQQDDGESGEVKPGPASASRLSRVYHCDVCDEDLTLTSTEIL
KHKRQHMHSAK
NT seq 3456 nt   +upstreamnt  +downstreamnt
atggactcggagaggggcagacacagccgggtctgggactgggacagccggcagtgtcga
gcccagctggacgagatctttttccgtcagcatgactacatccaggccggcagtccggag
caccgcgagttctgggctttctttgaccgcttccagaggttcaaaataaaaagggagatg
tctggtcctgcggaagaacgaagagaggacaagaaaggaaagaaaaagagcgtcactaaa
acggtggatctcggtcttccggaggaatatgacgcccggtaccggattaatgtctccgtg
tgcaccagagacatcgaggagcgtttggggaagtcggatcacagaagcaggcagagatcc
tcgggaccaggacctcatgagatctcggagtttcgcttgactttgctgcacttcctggat
ttcagtcaaaggcagagttttggaaaactggccaaactgcggcaggagcagaagaacctg
cccatctttcaataccgggatcggattgtggagctggtgaagcagcaccccgttatcgtg
gtggcaggagacacgggctgcggtaaatccacccaggtgccccagtacctactttcggct
ggattcaagcatatcgcctgcacccaaccacgccgcatcgcctgcatctccttggcaaag
agggttagctttgagagcctcaaccagtatggctccaaggtcgggtaccagatccgcttt
gagaccacccggaccacggccaccaagctgctcttcctgaccgaaggcctgctgctccgg
cagatccagcaggacgggtcgctgtcccagtaccaggtgatgatcgtggacgaggtccac
gagagacaccttcactgtgacttcctgctgggggtgctgcgttctctgctggccgatcgc
tcagacctgcgcctcatcctcatgtcagccaccatcaacatcaagcttttctctagctac
tttaacgatgcgccggtgctgcaggttccgggcaggttgtttcccatccaggtgatctac
cagccgattcctcccgaggagcagccctcccgctcagagaagctcgatcccagaccctac
ctgcgcatcctgcaggccatcgatcagcgttatcctccagaggagcgcggagatctgctc
ctcttcctcagtggagttgcagagatctccaccatccaggaagcctgtcagatttatgcc
actcacacgcgccgctggatcgtcttgcctctgcacagcaccctctcgcttgcccagcag
gataaggtgtttgacatcgcccctcccggtgtgaggaagtgcatcatctctacaaatatc
gctgagacctcggtcacgatagatggagtgcgttttgttgtggactcaggaaaagtgaaa
gagatgagctttgatccaaaagccaagatgcaacgacttcaggagttctggatcagccgg
gccagctctgagcagaggaaaggtcgagccggccgcacgggtccggggctgtgttaccgc
ctctacgccgagtctgactatgatgcctttgcaccgtatcctgtccctgaaatccacaga
gtggctctggactctctcattctccagatgaagagcatgggtcttggagatcctctcacc
tttgcctttattgatccgcctcctactgccagcatccagacggcagttacctatctgaaa
caacagggagcgctggacagctgtggtgaactgacctctattgggagtttgctggcacag
ctgcctgtcgatgtggtcatagggaagatgttggttcttggttctgtttttaacctggtg
gagccagttttgaccgtggcggctgccctcagcgtccaatcgccgttcctgcgcagctcg
caacacaaccctgactgctccaccgcccgacagcccctgcaaagcaaccagggagaccct
ttcaccttgctcaatactttcaatgcatgggtggaggtgaaaggagaaagaggcggcggc
tccaggaagtggtgcagaaggaggggcctggaggagcagaggctgtatgaaatggtcaac
ctgcgccgacagttcaaggaattgttgaaaagccacagcctcctggaatctcaggagagt
gctccttctggtggtgaccgtgagcagcgcaggaagagattcactgagaagaagaagctg
catcagatgaagagggagcacgagctgcaggagggcagcaaacgcaaagtcctgaagatg
aacgagggccaggagggggagttctcctccggctccgacatggaggagaaaggaaaacgc
aagaaggagaaggatggagcgggacacgacctggacatacaggaagtgaagtttaagttg
cgtcacaacgtgtccgagctgcaggaggcggtcaacgccagtcaggatttgtcgtcccgc
cagcaggctttgctcaagctgctgctctgccgcggcctctaccctcagctggccgtggcg
gatgagcacaacaccacccgcaaagactccgaccaggtgtttcacacaagaaataagcag
ggagtggtgatccaccccaccagcgtgtttgccagtgatccggaggtcctacatgtgcca
gaggaggacatcagagagacgggagctgatgggaaagaaagcagcaagcaccagctgctg
gccttcgtcactctgttggagaccaacaagccgtatttgtccaactgtgtgcgcgctcca
gcactgcaggccctgctgctggttgcaaactcggtggacaccaatgctgactgcacgcgg
atggtggtggacggctggctggagctggagctcagggagcctgaggaggccctcagggtc
ctgtccacggccctgaaactcagggctgagtgggaaaggctgctgcaggtccagctgggg
cagagctcttcagggggggaagcggtccagggggtgtcccgcaaagacgtgggaaagctg
agcgacagcctggtgcgcttcctgctctacactgagatccgttacaccttacggagactc
acagcgttgaagacgcagaacctgtacgtcggtcctcagccggagacggacctctctgac
acaaaggctctggttctaaacccgctttttcccggagctgagaccaaaccagaccccatc
aaaggaggcctgcgcctgaccagttccttcacctacaactgtctggctgactccaaaaat
ctgtacagtgagtgcttgcgtaccttctggacatgtccgaactgcagcctgtacatgcct
ctatccccgctggagcgcatgcaccacgaagcctcctgcaggccggcaggagagcagcag
caggacgacggagagtctggagaggtaaagccgggccccgcgtcggcgtcccgtctcagc
agggtttaccactgcgacgtctgcgacgaagacctgaccctcacttccacggagatcctc
aaacataagaggcagcatatgcattctgccaagtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (21)   
   KEGG ORTHOLOGY (1)   
   RefGene (17)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (7)   
   Pfam (7)   
All databases (37)   

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