KEGG   Oryzias latipes (Japanese medaka): 101171810
Entry
101171810         CDS       T02443                                 
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1
  KO
K08285  midline 1 [EC:2.3.2.27]
Organism
ola  Oryzias latipes (Japanese medaka)
Pathway
ola04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:ola00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    101171810
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ola04121]
    101171810
Enzymes [BR:ola01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     101171810
Ubiquitin system [BR:ola04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRIM/RBCC proteins
    101171810
SSDB
Motif
Pfam: COS SPRY zf-B_box fn3 zf-RING_UBOX zf-C3HC4_4 zf-C3HC4 PRY zf-C3HC4_3 zf-RING_2 Pur_ac_phosph_N zf-C3HC4_2 zf-RING_5 ZNF512_C2H2 NDNF AAR2
Other DBs
NCBI-GeneID: 101171810
NCBI-ProteinID: XP_004066635
UniProt: H2LIN6
Position
2:complement(20567385..20641375)
AA seq 687 aa
MDTLESELTCPICLELFEDPLLLPCAHSLCFGCAHRILISHCATNESVQNIGAFQCPTCR
YVISLSPERGLEGLKRNVTLQNIIDRVQRASSSAGLPLPLPAPHSGPNSPCEESSNRLAL
VPVSAAMSNPGSPPEPVQCQFCELDPPQDAVKTCVTCEVSYCEECLRATHPNKKPFTGHR
LIEPMPDSHLRGLQCLEHDEEKVNMYCVSDDQLICSLCKLVGRHRDHQVAALSDRYEKLK
QALDSNLSNLIKRNNELESLMGKLIQTCQHVEVNASRQEGKLMEECDVLIDIIQQRRQII
GSKIKEGKAQRLRKLAQQISNCKQCIERSSALITQADQTLKETDHARFLQTAKSINERVS
MATASTQVLIPEIHLTDTFDTFALDFTREKKLLENLDYLTAPSAPSIREELCTASYDTIS
VHWTSDDEFSIVSYELQYTIFTGQSNIASLCNSLDSWMIVPNIKQNQYTVHGLQSGTKYV
FVVKAINQAGSRSSEPGTLKTNSQPFKLDPKSAHKKLKVSHDNLTVERDETTSKKGHSQD
RFSSQSSYGVVGNVFIDSGRHYWEALIGGSTWYAIGIAYKSAPKHEWIGKNQASWVLCRC
NNSWVVRHNSKELAIEPSPHLRRVGVLLDYDAGYVTFYDAVGSQHLHTFHISFIQPVCPV
FNVWNKCLTILTGLPIPDHLEGLEPSN
NT seq 2064 nt   +upstreamnt  +downstreamnt
atggacactctggaatcagagctgacctgcccaatctgcctggagctctttgaagaccct
ctgctgctcccctgtgcccacagcctgtgttttggctgcgcccaccgcatcctcatctcc
cactgcgccaccaacgagtctgtccagaatattggcgctttccagtgccccacctgtaga
tatgtcatttccttgagtcctgagcgtggactagaaggactcaagagaaacgtcaccctg
cagaacattattgacagagttcagagagcctcgtcttcagctggactccctttgcctctg
ccggcccctcacagcgggcccaactctccctgcgaggaaagcagcaatcgcctggcactg
gtccccgtcagcgccgccatgtccaacccgggctcacctcccgagccggtgcagtgccag
ttctgcgagctggacccgccgcaggacgccgtgaagacgtgcgtgacgtgcgaggtgtcg
tactgcgaggagtgcctcagagcaacgcaccccaacaagaagccattcacgggccaccgg
ctcatcgagccgatgcccgactcgcacctcagagggctccagtgtctggagcacgacgaa
gagaaggtcaacatgtactgtgtcagcgatgaccaactcatctgctctttgtgcaaactg
gtcggccggcacagagaccaccaggtggcagcactaagcgaccgctatgaaaaacttaag
caagccctggattccaacctgagcaatctaatcaagagaaacaacgagctggagtctctg
atgggaaaactgatccagacgtgtcaacatgtggaggtgaacgcatcccgtcaggagggc
aagctcatggaggagtgtgatgtcctgattgacatcattcaacagaggaggcagatcatt
ggcagcaagatcaaggaggggaaggctcagaggcttcgaaagctcgcccaacaaatttcc
aactgcaagcagtgcatcgagaggtcctcggccctcatcacgcaagctgaccagacgctg
aaggaaacggatcacgctcgcttcctgcagacggccaagagcatcaacgagagggtctcc
atggcaactgcatctacccaagtactgatccctgagattcacctgactgacacctttgat
actttcgcgctggacttcaccagagagaagaagttgttggagaacctggattacctcact
gctccgagtgctccatccataagggaagagctgtgcacggcgtcgtacgataccatcagc
gtccactggacatctgatgatgagttttccattgtgtcctatgagctccagtacaccatc
ttcacaggacagtccaacattgccagtctttgtaactcgctagacagttggatgatcgtt
cccaacatcaaacagaaccagtacacagtgcacggcctccaaagcggcaccaagtacgtc
tttgtcgtcaaggccataaaccaagcaggaagcaggagcagtgaaccgggaacgctgaag
accaacagtcaaccgtttaaactggaccccaaatctgcacacaagaagctgaaggtgtca
cacgataacctgacagtggagcgagatgaaaccacatctaagaagggccacagccaagac
cggttttccagccagagcagctacggtgtggtggggaacgtctttattgacagcgggcgt
cactactgggaggctcttattggtggaagcacatggtacgctattggcattgcctacaaa
tcagcccccaagcacgaatggattggcaagaaccaggcctcttgggtactctgccgctgc
aacaactcctgggtggtccgccacaacagcaaggagctggccatcgagccctcgccccat
ctgcgacgggtcggggtccttttggattacgatgccggatacgtcaccttctacgatgct
gtgggctcccagcacctgcacaccttccacatctccttcatccagcctgtgtgccctgtg
tttaacgtgtggaataagtgtctgaccattctcaccggcctacccatccctgaccaccta
gaaggactagaacccagcaactga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (16)   
   Pfam (16)   
All databases (45)   

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