KEGG   Oryzias latipes (Japanese medaka): 101172726
Entry
101172726         CDS       T02443                                 
Symbol
rbm15b
Name
(RefSeq) putative RNA-binding protein 15B
  KO
K13190  RNA-binding protein 15
Organism
ola  Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:ola00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ola03019]
    101172726 (rbm15b)
   03041 Spliceosome [BR:ola03041]
    101172726 (rbm15b)
Messenger RNA biogenesis [BR:ola03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    N6-methyltransferase complex
     101172726 (rbm15b)
Spliceosome [BR:ola03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA binding proteins (RBPs)
    101172726 (rbm15b)
SSDB
Motif
Pfam: RRM_1 SPOC RRM_3 Nup35_RRM_2 RRM_occluded
Other DBs
NCBI-GeneID: 101172726
NCBI-ProteinID: XP_020558753
Position
5:6228706..6232526
AA seq 830 aa
MKRQAVRDGSPSRALAKRIRERERESARREELPPPPPLALLLAESRSYHRRSRSREREKP
RLREERAAALELHHRHELSLLGRPPLRAAELPAARPGTLEYKTLLISNLGSQVSDEDVED
ALFHEFKKFGDVSVKLSHTPELGRIAYVNFRQPEDAKEARHAKSSRLALGDRQLKIEPMY
VRRRSVTPPDVSYLPLHAPYPYRQRSLSPPGTGVSSMRDLRARHFALESLGLSRDRERLL
DYYGMLDERGRPYAFPPMPVVEDLKPEDDQRATSNLFIGNLDGNVTEAELRRGFDKYGII
EDVVIKRPARGQGGAYAFVKFQNLDMAHRAKVAMQGRLIGGNPIKIGYGKANPTTRLWVG
GLGPGNSLTALAREFDRFGSIRNIDYVKGDSFAYIQYESLDAAQAACTQMRGFPLGGPER
RLRVDFAKVEESPSRPFPPGYQLPVPPPTHYDLLGEAYSRHRSLERELRGTRERSSPPSH
SLLSLRERVLLEREFPSSPTRSLDRRVGGVEAFGRAGRGARSRSRSRERWLKEREERRSR
RRSRSLSVDKQSEEKEKEKGRSRVRVPGGTASPDASPDRARVRAPDSTTEPRDHSPDSGG
GGRHANATEEEPPSSRHHSKRSASVNNHHRNSDVAAASPPAAHTDTSSTLSSLSEYAQGS
LTKVWQGFFALKNSSFPTELYMLEGGASFLSGVLKDSLNLQNRNQPSQLKIAQRLRMDQT
RLDEVSRRIKLGRPDGFAILLALQGAIDRQAPAPEPGLQIRLLRHLVTYLRNKEAAGVVG
LPATKEGGTGGMLYAFPPGEFSQQFLQAARRTVGNLDEEHMVIVIVSDTN
NT seq 2493 nt   +upstreamnt  +downstreamnt
atgaagcggcaggccgtgagagacggcagcccatccagggccctagccaagcggattcga
gagagagaacgggagagcgcccgcagagaggagctgccgccgccgccgccgctggctctg
ctgctggcggagagccggagctaccaccggcggagccgcagcagggagcgggagaagccg
cgccttcgggaggagcgcgcggccgcgctggagctccaccaccgacacgagctcagcctc
ctgggccggccgccgctgcgggccgcggagctccccgccgcgagacccggcacgctggag
tacaaaacgctgctcatcagcaacctgggctcgcaggtgtcggacgaggacgtcgaggac
gcgctgttccacgaattcaaaaagttcggggacgtgagcgtgaagctgtcgcacacgccg
gagctcggccgcatcgcctacgtcaatttcagacagccggaggacgccaaggaggcccgg
cacgccaagtcctcccggctggctctgggtgatagacagctcaaaatagagcccatgtac
gttaggaggcggagcgtcacccccccggacgtcagctatctacctttacacgccccctat
ccgtacagacagcgctccttgtccccacccgggaccggcgtgagcagcatgcgggacctc
cgggccagacactttgcgctggagagcctgggtctgagcagagaccgggaaaggctgctg
gactattatggtatgctggatgagagggggcggccctacgcgttcccccccatgcctgta
gtggaggacctgaagcccgaggatgaccagagggccaccagcaacctgttcatcggaaac
ctggacgggaatgtgacggaggctgaactcaggagagggtttgataaatacggcatcatt
gaggacgtggtcatcaaacggccagcacgcggccagggcggggcttatgcctttgtaaag
tttcagaaccttgacatggcccacagggccaaagtggccatgcagggccgtcttattggt
ggaaacccaattaaaatcggatacggcaaagccaaccccaccacccgactgtgggtgggc
ggtctgggaccaggaaactcgctgaccgctctggcgcgggaatttgaccgctttggaagc
attaggaacattgactatgtgaagggcgacagctttgcttacatccagtatgaaagtttg
gatgcagcccaggccgcctgtacccagatgaggggctttcctctgggcgggccagagcgc
cgcctcagggtggactttgctaaagtggaggagagcccctcccgcccatttccccctggt
taccagcttcctgtgcctccccccacgcattatgacctccttggagaggcctacagtcgc
catcgcagcctggagcgcgagctgagaggaaccagggagcgctcctcaccgccctcccac
agcctcctctctttgagagagagggtcctgctggagagagagtttcccagcagccccacc
cgaagcctggacaggagggtgggaggagtggaggcgtttggaagagctggccgaggggcg
aggagccgcagcaggagcagggaacgctggctgaaggagagggaggagaggaggagccgc
aggagaagcagaagtctgtctgtcgacaagcagtcggaggaaaaggagaaagaaaaggga
aggtcgagggttcgagttccgggaggcaccgcctcccctgatgcaagcccagaccgagca
cgggttcgagccccggactccaccactgagccaagagaccactcccctgacagtggtgga
ggggggcgacacgcaaatgccacagaggaagagcccccatccagccgtcaccacagcaag
aggtccgcgagcgtcaacaaccaccatcgaaacagcgacgtggccgccgccagccccccc
gctgcccacacggacacctcgtccaccctgagctcgctgtcggagtacgcccagggctcc
ctcaccaaggtgtggcagggcttctttgccttgaagaacagcagcttccccacggagctg
tacatgctggagggaggggcctccttcctgagcggcgttttgaaggacagcctgaatctg
cagaaccggaaccagccaagccagttgaaaattgcccagcgcctgcgcatggaccagacc
cggctggacgaggtgtcgcgccgcatcaagctcggccgccctgacggctttgccatcctg
ctggctctgcagggcgccatcgaccgccaggcccccgcccctgagccgggactgcagata
cgtctgctccggcacctggtgacatacctgcgcaacaaagaggcggcgggggtggttggt
ctgcctgccaccaaagaggggggcacgggtgggatgctgtacgccttcccccccggtgag
ttctcacagcagttcctgcaggctgcccggaggactgtgggtaatctggacgaggagcac
atggtcattgtgatcgtcagcgacactaattga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   RefGene (23)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (38)   

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