KEGG   Oryzias latipes (Japanese medaka): 101175386
Entry
101175386         CDS       T02443                                 
Symbol
lsm7
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm7
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
ola  Oryzias latipes (Japanese medaka)
Pathway
ola03018  RNA degradation
ola03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ola00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    101175386 (lsm7)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    101175386 (lsm7)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ola03019]
    101175386 (lsm7)
   03041 Spliceosome [BR:ola03041]
    101175386 (lsm7)
Messenger RNA biogenesis [BR:ola03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     101175386 (lsm7)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     101175386 (lsm7)
Spliceosome [BR:ola03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    101175386 (lsm7)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 101175386
NCBI-ProteinID: XP_004067760
UniProt: A0A3B3H6C5 A0A3P9MRA3
Position
4:complement(8272835..8275482)
AA seq 103 aa
MADKEKKKKESIFDLSKYIDKPIRVKFQGGREASGVLKGFDPLLNLVLDGTIEYMRDPDD
QLKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDG
NT seq 312 nt   +upstreamnt  +downstreamnt
atggcggataaagaaaagaaaaagaaggagagcatctttgacttgtccaaatacatcgac
aagccaattcgtgtgaagtttcaaggaggacgggaggccagcggagttctaaaagggttc
gatcctctattgaacctggtgttggacggtacaattgagtacatgcgtgatccagacgac
cagctgaagctgacagaagacaccaggcagctggggctggtggtctgcagaggaacctcc
gtcgtcctgatctgtcctcaggacggcatggaggccatacccaaccccttcatacagcag
caagacggctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (39)   
   KEGG ORTHOLOGY (1)   
   RefGene (35)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (50)   

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