KEGG   Ostreococcus lucimarinus: OSTLU_29798
Entry
OSTLU_29798       CDS       T01029                                 
Name
(RefSeq) predicted protein
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
olu  Ostreococcus lucimarinus
Pathway
olu03020  RNA polymerase
olu03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:olu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    OSTLU_29798
  09124 Replication and repair
   03420 Nucleotide excision repair
    OSTLU_29798
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:olu03021]
    OSTLU_29798
   03400 DNA repair and recombination proteins [BR:olu03400]
    OSTLU_29798
Transcription machinery [BR:olu03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     OSTLU_29798
DNA repair and recombination proteins [BR:olu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      OSTLU_29798
SSDB
Motif
Pfam: RNA_pol_Rpb4
Other DBs
NCBI-GeneID: 5006924
NCBI-ProteinID: XP_001422955
JGI: 29798
UniProt: A4S236
Position
21:complement(301238..301681)
AA seq 147 aa
MSAALCIGRKSAEDVEDAGELRLGPDFDDANCLSLAEVKIVCESKVADDAEQAEETSTTR
TRVFEKTLAYAKRFSGNTSSTAAAAIRELHNNSGLHDFEGAAISNLKPQDWDEAKTLVPS
LEQEDRGLTEEGIQAMLDEMSNVRKFE
NT seq 444 nt   +upstreamnt  +downstreamnt
atgtccgccgcgctgtgcataggaagaaagtccgcggaagacgtcgaggacgccggggaa
ctgcgactcggtcccgatttcgacgacgccaactgcttgtcgctcgccgaggtgaagatc
gtgtgcgagtcgaaagtcgccgacgacgccgaacaagcggaggagacgtcgacgacgcgc
acgcgggtgttcgagaagacgttagcgtacgcgaagcggttcagcgggaacacgagcagc
acggcggcggcggctattcgggaattacacaacaattcagggttgcacgactttgaaggc
gcggcgatctcaaacttgaagccgcaggattgggacgaggcgaagactttagtgccgagc
ttggagcaggaagatcgcgggttgaccgaggaagggattcaagcgatgttagacgagatg
tcgaacgtgcggaagttcgaatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (25)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (35)   

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