KEGG   Oleiphilus messinensis: OLMES_1076
Entry
OLMES_1076        CDS       T04860                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
ome  Oleiphilus messinensis
Pathway
ome03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ome00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    OLMES_1076
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ome03019]
    OLMES_1076
   03016 Transfer RNA biogenesis [BR:ome03016]
    OLMES_1076
Enzymes [BR:ome01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     OLMES_1076
Messenger RNA biogenesis [BR:ome03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     OLMES_1076
Transfer RNA biogenesis [BR:ome03016]
 Prokaryotic type
  tRNA degradation factors
   OLMES_1076
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 OB_Dis3 CSD RNase_II_C_S1
Other DBs
NCBI-ProteinID: ARU55161
UniProt: A0A1Y0I421
Position
1195836..1198529
AA seq 897 aa
MSNMKSDPHAQRESENYKKPIHSREYILDWLKGRKAAVTHFELCHEFDYEDADDVEALRR
RLIAMTRDGQLICNRRGGYLPVTSVDLIKGRVIGHRDGFGFVVPEDGGDDLFLSARQMQA
LFNDDVVLVRVDDVDHRGRRIASVVEVLERNTTEIVGRYYEDSGIAFVTPENVRISQDVI
IPREQSGEALHGQYVLVELTRQPTIRTKPLGRVIDVLGDHMAPGMEIEVAIRSHGIPFLW
GEEVKAEIADLSVDVTESDKKDRIDLRDLPLVTIDGEDARDFDDAVYCAPKRGGGWRLYV
AIADVSHYVRLGSALDEEARKRGNSVYFPGHVVPMLPEVLSNGLCSLNPQVDRLCMVCEM
TISQAGRLSGYRFYEAVMHSHARLTYTQVAKMLDTEVGEEGEALRERFADLVPHLNNLYA
LYKQLRIAREERGAIDFATTETRIEFGDERKIEQIVPVERNDAHRLIEECMLCANVATAR
FIAKHNIPSLYRVHEGPGEEKLQNLRSFIGELGLQMRGGETPTPADYQELILQIQDRPDF
SVIQTVMLRSMSQAYYGPENKGHFGLGFKAYTHFTSPIRRYPDLMIHRAIKSLIYKSSEL
LGGDAPRDYVPAPSPKPSDYPYPFDVPAMLEVGEGCSMTERRADDATRDVESWLKCEFLQ
QHVGDVYPGVISAVTSFGLFVELSDLFIEGLVHVSSLSNDFYHYDAVKHRLVGERTGTSY
RLGDLLEVQVVRVDLEERKIDYEIVGRSKAIKKKRNDARSQGGEDRTGKRKTKRLLDKLD
QYSREESRSHGDKAESKGELTRPVRKRKGSSKSKRDGESGEKSGSKKKSGSKARPGTQAK
TRSGAKTKSGSKAKTGIKSRAGTKSDAGAKVEAGVKKNVESKVRTKVKSKAKKGRKR
NT seq 2694 nt   +upstreamnt  +downstreamnt
atgtccaatatgaaatctgacccccatgctcagcgggaatcggaaaactataaaaaaccc
atccacagccgtgaatatatccttgactggttaaagggtcgtaaagctgcggtcacgcac
tttgaattatgtcatgagtttgattatgaagatgctgacgatgtggaagcactgagacgg
cggctgattgcgatgacgcgggatgggcagttaatttgcaaccggagaggtgggtacctg
ccggttaccagtgttgatttgatcaaggggcgggttatcgggcaccgggatggattcggg
tttgttgtgccagaagatggcggcgatgatttgttcctcagtgcgcggcagatgcaggct
ttgtttaatgatgatgtcgttctggtacgcgtagatgatgttgatcatagagggcggcgc
attgcctctgtggtggaggttctggagcgaaataccacagaaattgtaggtcgatactat
gaagacagtggtattgctttcgttactcccgagaatgtaagaatttctcaggatgtgatt
atcccgcgagagcagtcaggcgaagcgttacacggacaatatgtgttggtggagctgacc
cggcaaccgactatccgaaccaaaccgcttggtcgtgttatcgatgttttgggtgatcac
atggctccgggcatggaaatcgaggtggcgattcgatcccatggcatcccttttctctgg
ggggaggaggtcaaagctgagattgccgatctgagtgttgacgttaccgagtccgataag
aaagaccggatagatctccgtgatttgcctctggtaaccatcgatggtgaggacgcgcgg
gatttcgatgatgctgtttattgtgcacccaagcgtggcggcggatggcgcctgtacgtt
gccattgctgatgtgtcccattatgtgcgtttggggagcgctcttgatgaagaagcccgt
aagcgaggtaactcggtttatttcccggggcatgtggtgccaatgttgcctgaggtgctt
tccaatggtttgtgctccctgaacccgcaagttgatcgtttgtgtatggtttgtgaaatg
accatcagtcaggcgggacggttgagcggataccgattttacgaagctgtcatgcattcc
catgcccggctgacctacacgcaggttgctaaaatgcttgacaccgaggtcggtgaagaa
ggtgaagcattgcgtgagcgttttgccgatttggtaccgcatttgaataacctgtatgcg
ctctacaagcaacttcgtattgcccgggaagaacggggggcgattgattttgcgaccact
gaaacccgtattgaatttggtgatgagcgaaagattgagcagattgtgccggttgagcga
aatgatgcgcaccgtttgattgaggaatgcatgctgtgcgccaatgtcgccactgcgcga
ttcatcgccaagcataatattccctcgttatatcgggttcacgaggggccgggggaggaa
aaattgcagaacctccgttccttcattggtgaacttgggctgcaaatgcgcggcggagag
acgccaacgccagcagactaccaggaattgatccttcaaattcaagatcgtcccgacttc
agtgtaattcaaaccgtgatgttgagatccatgtcccaagcctattacggcccggaaaat
aaagggcattttggcttagggttcaaagcgtacacgcactttacatcaccgatacggcgc
tatcctgacctgatgattcatcgtgcgatcaagtctctgatctataagtcatccgagctg
ttggggggggatgcaccaagagattatgttcctgctccgtcacccaagccctcagattat
ccttatccatttgatgtaccggcgatgttggaagtgggtgaaggttgctcaatgaccgag
cggcgagcggatgatgcgacccgggatgttgaaagctggttgaagtgtgagttcctgcaa
cagcatgttggtgatgtttatcccggtgtgatttctgcggtgacgtcctttgggttgttc
gtggagttatcggatctgtttattgaagggctggttcacgtctcgtctttgagtaatgat
ttttatcattatgatgcggtgaagcatcgcttggttggcgaacgaacgggaaccagctac
aggcttggcgacttgctggaggtgcaggttgttcgcgtagatcttgaggagcgtaaaata
gattacgaaatcgtaggtcgtagcaaagcaatcaagaaaaagcggaatgacgcaaggtca
cagggcggcgaagatcgtacagggaaacgaaaaaccaaacgacttttggacaagctggat
cagtactccagggaagaatcccgtagccatggcgataaagccgagagtaaaggtgagttg
acgagacccgtacggaaacgaaaagggtcttcaaagtcaaagcgtgatggcgaatctggt
gagaaatccggatccaagaagaaatccgggagcaaggcccggcctggcacacaggcaaag
accaggtcaggagccaagactaagtccggctctaaagcgaaaacaggtattaagtctcgg
gcgggtaccaagtcggatgccggagccaaggtcgaagctggtgtgaagaaaaacgttgaa
tccaaggtgcgcaccaaggttaagagtaaagcgaagaaaggtcgtaagcgttga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (26)   
   KEGG ORTHOLOGY (1)   
   RefGene (23)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (41)   

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