KEGG   Oreochromis niloticus (Nile tilapia): 100707310
Entry
100707310         CDS       T06104                                 
Symbol
alyref
Name
(RefSeq) THO complex subunit 4
  KO
K12881  THO complex subunit 4
Organism
onl  Oreochromis niloticus (Nile tilapia)
Pathway
onl03013  Nucleocytoplasmic transport
onl03015  mRNA surveillance pathway
onl03040  Spliceosome
onl05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:onl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100707310 (alyref)
  09122 Translation
   03013 Nucleocytoplasmic transport
    100707310 (alyref)
   03015 mRNA surveillance pathway
    100707310 (alyref)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    100707310 (alyref)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:onl03019]
    100707310 (alyref)
   03041 Spliceosome [BR:onl03041]
    100707310 (alyref)
Messenger RNA biogenesis [BR:onl03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     100707310 (alyref)
    TREX complex
     100707310 (alyref)
Spliceosome [BR:onl03041]
 Complex C
  Other components
   EJC/TREX
    100707310 (alyref)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    100707310 (alyref)
SSDB
Motif
Pfam: RRM_1 FoP_duplication RRM_occluded
Other DBs
NCBI-GeneID: 100707310
NCBI-ProteinID: XP_003454070
Ensembl: ENSONIG00000019434
UniProt: I3KTL7
Position
LG4:13801451..13804765
AA seq 278 aa
MTDKMDMSLDDIIKQNRQQRGGGRGGRGRGRGGAGGGGRGGGGPGRLGVSGGGFGGRGGG
SGPMRNRQIPKRARGRPTPYSRPKQLPDKWQHDMFDNGFSGFNGAAGGGGGAGVETGGKL
LVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERRADALKAMKQYNG
IPLDGRPMNIQLVTSQIDTQRRPMQGLNRGGGGGGMMNRSRGGGGFGGMQRGRGGRGAGG
PRGRGRGGRGGGSSSKQQLSAEELDAQLDAYNARMDTS
NT seq 837 nt   +upstreamnt  +downstreamnt
atgaccgataaaatggatatgtctctagacgacattatcaagcagaacaggcagcagaga
ggtggaggccggggcggcagaggtcgaggccgcggaggcgcaggtggcggcggccgtgga
ggaggaggccccgggcgtctcggagtcagcggtggaggatttggaggccgaggcggcgga
tccggcccgatgaggaaccgacagatcccgaaacgcgctagaggcagaccaacgccttac
agcaggcctaaacagcttccagataagtggcagcacgacatgttcgacaacggcttcagc
ggcttcaatggtgctgctggaggtggaggaggagctggcgtggaaactggagggaagctc
ctcgtgtccaatctcgactttggggtctcagatgcagatattcaggaactttttgctgag
tttggaactctgaaaaaggctgcagttcattacgaccgatcaggaagaagcttgggaact
gcagatgtccactttgaaaggagggcagatgcgctcaaggccatgaagcaatacaatggc
atcccactggatgggcgccctatgaacattcagctcgtcacatcacagatcgacacacag
agacggccaatgcagggtctgaacagaggcggcggcggaggaggcatgatgaacagaagt
cgtggtggtggcggctttggaggcatgcagagaggccgtggagggcgtggtgcaggtggc
cctagaggacgtggacgaggcggccgtggtggtggtagtagtagcaagcagcagctgtca
gcagaggagctcgatgcccagttagatgcctacaatgccaggatggacaccagctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (3)   
   Pfam (3)   
All databases (22)   

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