KEGG   Oreochromis niloticus (Nile tilapia): 102081986
Entry
102081986         CDS       T06104                                 
Symbol
col24a1
Name
(RefSeq) collagen alpha-1(XXIV) chain
  KO
K19721  collagen type V/XI/XXIV/XXVII, alpha
Organism
onl  Oreochromis niloticus (Nile tilapia)
Brite
KEGG Orthology (KO) [BR:onl00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:onl00536]
    102081986 (col24a1)
Glycosaminoglycan binding proteins [BR:onl00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   102081986 (col24a1)
SSDB
Motif
Pfam: Collagen COLFI Laminin_G_3
Other DBs
NCBI-GeneID: 102081986
NCBI-ProteinID: XP_005457179
Position
LG17:32668367..32754946
AA seq 1723 aa
MHLGAQRTRSGHVSAAATWNFLLLLSVCSAAPSGEEDYLAQGVDILYRLGLTTQSRTDDP
YERTSSQPPTYANVPSPFDGPFSGYGALLDSNSLYEAPVPNLFPSEFGEEFSVIVSLSSW
RANNAFLFSIKDRMDRLRFGIQLLPRRVVVYTAEKASIYFNYNWQDGRLHPFAVGVRARS
VSFYANCGGVQQWEQTLGRSQTLGQSGGVFTLGRMNSKAAPFSGRVCQLDIYPSAQAAAH
YCKYLKKQCRLADTYRLHFPHSDSDIVVNDPPSSHLTKSLLGVAATQNTPVGSTAAIKLS
PDRLVTQHSTLSPPIRPHLGDQENISTLEPLSHSATSSLQLYSPTVTTPSSQAALGLAYS
TTTTTTKNVLANDTRPQGDTEHSENSTEEERNSRKQPSPDATTGVVSLVRQSQLKEELRN
NSITSSRDSGSTTHHFPETHLRANSTTLYRENQVDTSEQHDLDGSYDDVDMGEYDYGYEE
PEFFYDYQDGLRGPKGEPGPPGPPGPPGLPGPPGKRGSRGPPGPHGNPGQPGPPGPKGSK
GDPGLSPGQAPPGEKGDRGPPGRPGPNGFPGLLGPKGYLGPPGPPGEQGIPGLPGEAGAA
GYPGRQGSAGPQGSPGPKGVRGFIGPPGDAGPPGLEGEKGIPGPAGRPGPKGRHGVMGEA
GERGPPGPDGNEGPVGGTGISGFPGLRGDPGPEGPRGLPGMVGPQGPTGRAGLPGLKGDK
GETGQRGEPGEMGYQGDKGAAGAPGLPGPRGKPGPPGKIGEMGVPGPPGPPGPEGFPGDI
GAPGPNGPLGPKGLQGERGPQGPPGPKGIQGDEGPLGPPGRPGPTGRPGRKGHIGEPGSE
GLQGEKGDMGNIGKVGPQGPAGLIGIAGVIGVPGEKGDRGPPGPTGPAGEKGPRGYPGLP
GSPGDIGMQGAPGPPGPRGSPGIAGPKGRRGPRGPDGPPGELGPEGIKGEKGEIGPKGEP
GFIGKAGNSGERGPPGKAGKPGIPGSTGERGAQGEPGPRGPPGEAGPDGEQGPEGLPGLE
GEPGAIGEPGAKGDVGPPGAEGEQGQEGMRGPPGPPGEDGPQGKDGAKGEPGERGPFGES
GEKGTEGDPGPLGPPGEPGKQGFRGPEGKVGPPGNRGRHGKKGERGPPGLAGEIGTRGDI
GQPGEPGLKGARGTRGPPGQPGVMGIEGQPGLPGYQGHPGKPGPVGPPGPKGEKGYPGED
NRTPGLPGPLGEPGPPGERGERGESGDEGYQGYIGTPGPRGASGPQGPPGSPGSPGEPGP
KGEKGAPGLAGKKGARGLVGAPGIEGPTGLPGLTGMKGYPGPDGPPGPTGLAGLPGKQGR
QGQRGSVGLEGPAGRPGPMGELGLPGPPGERGPPGHKGEPGLPGDRGAPGIKGMKGAAGD
QGKKGDPGPKGQPGETGDLGMIGLQGLPGPKGPTGDLGLRGFPGPKGPIGTLGFTGPLGP
EGKMGPMGKPGPRGPKGNSGEMGPQGPQGSPGPRGPPGAPGPTRVLYDDLAVYSLSASNG
ALRTESFQNMEMSMPDQNTEVLKTLQYLSSVIESIKQPLGTKENPARVCKDLLDCQHKLK
DGWFWVDPNLGCTSDAFEVFCNFTAGGQTCLHPVSTDKMVFDIGNVQMKFLHLLSSEASQ
SITFHCLSYQPSSTADSFSSNGHKENTRLRFRGWNKQMFEKDTLLEPHVLQDECKIQDGS
WHQSQFLFHTQDSGQLPIVDIEEFPISQINSQRRVETGPVCFL
NT seq 5172 nt   +upstreamnt  +downstreamnt
atgcatttaggagctcaacggacaaggagtggacacgtttccgcggcagcaacgtggaac
tttctcctgctcctgtcagtatgctcagcagcaccctctggagaagaagattacctagct
caaggagtggatatcctttatcgattggggcttacaactcaaagccgcacagacgatccc
tacgaaaggacaagctcacagcctcccacttatgcaaatgttccctcacctttcgatggc
cccttttctggatatggggcgttgctcgactcaaactccctctatgaggctccagtgccc
aatctattcccttcagagtttggcgaagagttctccgttatagttagcctaagctcctgg
cgagcaaacaatgcatttctttttagtatcaaggacaggatggaccggttgcgttttggc
attcagttgctgccacgcagagtggtggtttatactgcagagaaagcatccatctacttc
aactacaattggcaggatgggcgcctgcacccttttgctgttggggttcgtgcacgttca
gtgtccttctatgcgaattgtggaggggtgcagcagtgggagcaaaccctggggagatct
caaacactggggcaatctgggggtgtcttcactctgggaaggatgaactccaaggcggca
ccatttagtggtcgagtctgccaactggatatctatccctcagctcaagctgccgcgcac
tactgcaaatatcttaaaaaacagtgccggctggccgacacttaccgattacatttccca
cattctgattcggatattgtggtgaatgaccccccttctagccatttgacaaagtctctt
cttggagtagcagctactcaaaatacacccgtcggatccacagcagccattaaactatcc
ccagatcgtttggtcacgcaacattcaactctgagcccaccaatacgacctcatctgggg
gaccaagaaaacatttccacattggaaccattatcccactctgccacatcatcactccag
ctttatagccccaccgtaactacgccaagtagtcaagcagctctgggtcttgcctatagc
acaacaaccaccactaccaaaaatgtgttggctaacgacactaggccccagggggacacg
gaacactctgaaaacagcacagaagaagagagaaattccagaaaacagccaagtccggat
gccactacaggtgttgtttccctggtcagacagagccaactaaaggaagaactcaggaac
aactccatcacaagctctagggactctggctccacaacccatcatttcccagagactcat
ctgagagccaacagcactactttgtacagggagaatcaggtggacacctcagagcagcat
gatttggatggcagctatgatgacgtagacatgggagagtacgattatggatacgaggag
ccagagttcttctatgactaccaagatggtttacgtggccccaaaggagagccgggtcct
ccgggtcctcccggtccccctggtttacctggtcctccaggaaaaagaggctctcggggt
ccccctggtccacatggaaacccaggacagcctggaccacctggacccaagggttcaaag
ggagaccctgggctgtctccaggtcaggctccaccgggagagaagggtgacagaggacca
ccaggtcgtcctggacccaatggatttccaggcttactgggtcctaaaggttatctgggt
ccacctggaccaccaggagaacaaggcataccaggacttcctggggaagctggagctgca
ggttaccctggcaggcagggctcagccgggccacaaggtagccctgggcctaaaggtgtt
cgtggtttcattgggcctccgggcgatgctggcccacccgggctggaaggggagaaaggc
atacctggacctgctggaagacctggccccaaaggaagacatggtgtcatgggcgaggct
ggggagagggggcctcctggtccagatggaaatgagggccctgttggtgggactggcata
agtggctttcctggtctaaggggagacccagggcccgagggaccacgaggactgcctggt
atggtgggacctcagggcccaacaggacgagccggcctgcctggattgaaaggtgataag
ggtgaaaccggacaaaggggcgagccaggagagatggggtaccagggggataagggtgct
gctggtgcacctggtcttcctgggcccagagggaaaccagggccaccgggtaaaattgga
gaaatgggtgtgcctggaccacctgggcctccaggaccagaggggtttcctggggacatt
ggagcgccgggcccaaacggaccacttggtccaaagggtttgcagggtgagagaggaccc
cagggtccgccagggcctaaaggaatacagggcgacgaaggaccactcggcccacccggc
aggcctggccctactgggagacctggaaggaaaggccacataggtgaacctggctccgag
ggtttacagggagagaaaggggacatgggaaatattggaaaagttggaccacaaggtcca
gcaggcctgattgggatagctggggtgataggggttcctggtgaaaagggtgaccgggga
ccaccaggtccaacaggtccagccggagagaaggggcccaggggttatccagggttgcca
ggaagcccaggggacatcggcatgcaaggtgcacctggtccaccgggaccgaggggtagt
ccaggcattgctgggccaaagggtagaagggggccccgaggtccagatggcccaccggga
gaactgggtcctgagggcatcaagggtgaaaagggggagatcggacctaaaggagagcca
ggcttcataggcaaggctggaaattcaggagagagaggccctcctgggaaggctggaaaa
ccaggtattccaggcagcaccggggagaggggagcccaaggtgaaccaggacccagagga
cctcctggagaggctggacctgatggagaacaagggcctgaaggtttaccaggtttagag
ggagaaccaggtgccattggagagccaggggcaaagggtgatgttgggcctccaggagct
gaaggggagcaggggcaggagggaatgagaggtcctcccggtccccctggtgaagacgga
cctcagggaaaagatggagccaagggtgaacctggagagcgtgggccttttggggagtca
ggggagaaagggacggaaggggatcctggacccctggggccacccggagagcctgggaaa
cagggcttccgcggtccagaaggaaaagtgggtcccccaggaaacagaggacggcacgga
aagaaaggagagaggggtcctcctggtcttgctggggagattggcactcggggagacatc
ggccagccgggcgagccaggactgaaaggtgccaggggaactcgaggcccacctggtcag
cctggagtcatggggatagaagggcaaccaggacttccaggataccaagggcaccctgga
aagcctgggcctgttggcccgccaggacccaaaggtgaaaagggttacccgggcgaggac
aacaggaccccaggactgccagggcccttaggtgaaccagggcctccaggggaacgagga
gagcgtggagagtcgggggatgaaggctatcagggctatatcggtacccctggacctcgt
ggggcttctggaccacaaggcccaccgggatctccaggctcccccggagaaccaggccca
aaaggagaaaaaggagctccgggtttggctggaaagaaaggtgcaagaggtctggttgga
gctcccggcattgaagggccgactggtttacctgggctcacaggaatgaagggttatcca
ggccctgatggccccccgggaccgactggcttagcaggacttccaggaaagcaaggtcga
cagggtcagaggggctcggtgggactggaagggcctgctggacggccaggtcccatggga
gaacttggacttcctggacctcctggagaaaggggaccgcctggtcacaagggagaacct
ggcctaccaggagacaggggggcccctggaatcaagggcatgaagggggctgcaggtgac
cagggaaagaaaggagacccaggacccaaaggacagcctggggaaactggagatctgggc
atgattggtttacagggcttaccaggacctaaggggccaactggtgatttaggactgaga
ggtttccctggtcctaaaggtcctatcggtactttgggcttcactggacctctaggccct
gaaggaaaaatgggtccaatgggaaaacctggaccaaggggtccaaaaggaaacagtggt
gaaatggggcctcaaggaccacagggaagccctggacccagaggaccccctggcgctcct
ggtccaacaagggtgttatatgacgacttagcagtctacagtctatccgcctccaatggt
gccctgaggacagagagtttccagaacatggagatgagcatgccagaccagaatacggaa
gtacttaagactctacagtatttgagcagtgtgatcgagagcatcaaacagcctctcggg
acaaaggagaacccagctcgtgtctgcaaagacctgctggactgtcagcacaagttaaaa
gacggttggttctgggttgatccaaacctgggctgtacgtctgatgccttcgaggtgttc
tgcaactttacagctgggggacagacttgtttacatccagtgtcaactgataagatggta
tttgacataggaaatgtccagatgaagtttctccatttactgagcagtgaggctagccaa
agcatcacgtttcactgcctgagttatcaaccctccagcaccgcagacagcttcagctcc
aatggacacaaagagaacaccaggcttcggtttcgtggctggaacaaacagatgtttgag
aaagacacactacttgaaccacatgtgctacaagatgagtgcaagatccaagatggcagc
tggcaccaatcacaattcctcttccatactcaggacagtggtcagctaccaattgtagac
atagaggaatttcccatttcacaaatcaacagtcagcgacgtgtagaaaccggtccagtc
tgcttcctctga

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