KEGG   Oenococcus oeni: OEOE_1000
Entry
OEOE_1000         CDS       T00408                                 
Name
(GenBank) DNA polymerase III, alpha subunit
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
ooe  Oenococcus oeni
Pathway
ooe03030  DNA replication
ooe03430  Mismatch repair
ooe03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ooe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    OEOE_1000
   03430 Mismatch repair
    OEOE_1000
   03440 Homologous recombination
    OEOE_1000
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ooe03032]
    OEOE_1000
   03400 DNA repair and recombination proteins [BR:ooe03400]
    OEOE_1000
Enzymes [BR:ooe01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     OEOE_1000
DNA replication proteins [BR:ooe03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     OEOE_1000
DNA repair and recombination proteins [BR:ooe03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     OEOE_1000
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger HHH_6 PHP tRNA_anti-codon HHH_3 Ist1
Other DBs
NCBI-ProteinID: ABJ56909
UniProt: Q04F63
Position
934193..937075
AA seq 960 aa
MSYTPLQVFSEYDLLRNPDSTIELVKALKKRGFQAAVLANHDYLYGAEKFRQAAISVNIR
PIIGLTISDTDHGEVIFVSKNYSGYQNLMKISTYLAFNKNSQFILKENNLDFSNLALIFQ
DGKETKIKNSSSFTRKELGYFPIDWVKKNDSVTASALQHIEKNELNFTGKSEIVGKYLKD
ENFYASNLPDEILKNNQHFIADIVDDWPKSEKHLPIFPLPDSENNPKKYLSKLVKLGLEN
RFKNKDIPEAYQKRIDRELRTIFQLDLADYFLVVWDIINFARHENIQLGAGRGSAVGSLV
AYALYITTIDPIKYDLYFERFLNPKRIQLPDIDIDVPGNRRQEIVEYLQKKYSLDNFSQI
GTFDTFKRRLAVRDSARIFASSEGTLKRFSRFMAQNNDALEDADPNNLPETIAELPNSSE
IISLAQSISGLPRHVGIHAAGIVLSPEKLVNYVPLNQVSDITVTQFDKDDVEAIGLVKFD
LLRLTNLDMIADIRSLIQQHYGKKFNLDSIDLNDKKVLDSFKNLQTNGIFQFESESAKSA
LKQIAVSSFDDIVAVNALNRPGPSENIPIYAQGKKDPNHIEIIDKSLQKILLPTYGVIIY
QEQVMQIAQVYAGFTLGEADVFRAAIGHKNEEKLFAQHDAFIKGAVEKGHQQEQAEEIFA
YIERFANYGFNKSHAVAYSKLAFEMAYLKIYFPLEFFSVLLNYDTKNSYLQDIKNKGIKL
LGPDINHAERGFISDKGVIYVGLGKIKGLNRKVIDEIVKERNSHGLFSGLTDFLQRMAGS
DIGESDIVQLTYAGSLDHFGYNRQELKTNAASLITAMEFGGSLLSETKISAIGEMSLLDR
LAHEKEVLGFTISGHPIDSLRKEIVKKGYTQINDLKADQIVKMAVMIDSIRTTRDKNGNQ
MAFVSISDGSGESSLTVFAREYSQMSGVLKNGSLIALIGRTQLRNGEINIIANKIQQIGH
NT seq 2883 nt   +upstreamnt  +downstreamnt
atgagttatactccattacaagtattcagcgaatatgatttgttaagaaaccctgattcg
acgattgaacttgtaaaagctctcaaaaaaagaggctttcaagctgctgttttggcaaac
cacgattatctttatggagctgaaaaatttcgacaggctgcaatttcggttaacattcga
cctattatcggtttaacgatcagtgataccgatcatggtgaagtaatttttgtttcaaaa
aattattctggctatcagaatttgatgaaaatcagcacttatttagcctttaataaaaat
tcgcagtttattttaaaagaaaataatttggatttttccaacttggcattgatcttccaa
gatggaaaagaaacaaaaattaaaaattcaagcagctttactcgaaaagaacttggctat
tttccaatcgattgggttaagaagaatgattccgttaccgcaagtgctctccaacatatt
gaaaagaacgagttgaattttactggcaaatcagaaatcgtcggaaaatatttaaaagat
gaaaatttctatgcaagtaatttaccggatgaaatattaaaaaacaaccagcactttatc
gctgatatagttgatgattggccaaagagcgagaaacatttaccaatttttccattaccc
gattcggaaaataatccgaaaaaatatttgagcaagttggttaaacttggattagaaaat
cgttttaaaaataaagatattccagaagcttatcagaaaagaatcgatcgagaattgagg
actattttccaattagatttagcagattactttttggtagtctgggatattatcaatttt
gctcgtcacgaaaatattcagctcggcgctggtcggggatcggcagtcggatcattggta
gcatatgctctgtatataacgactatcgacccaattaaatatgatctttatttcgaacgt
tttttaaatccaaagcggattcagcttcctgacatagacattgatgtgccaggcaacagg
cgccaggaaattgttgaatatctgcaaaaaaagtattcgcttgataatttttctcaaatt
ggaacttttgatacttttaaaagaagattggcggttcgcgacagcgcgagaatttttgcc
agcagtgaagggacgcttaaacgtttttcacgatttatggcacagaataatgatgcgtta
gaagatgccgatccaaacaatttgccggaaacaattgcagagcttccaaattcttcggaa
attatttccctggcacaatctatttccgggttgcccagacatgttggaatacatgctgct
ggaattgttttaagtccggaaaagctagtgaactatgttcctctgaatcaggtttccgat
atcaccgttacccagtttgacaaagatgatgtcgaggcgattgggttggttaaattcgat
ttgctgcgtcttaccaatttggatatgatcgctgatattcgatctttaattcaacaacat
tatggaaaaaaatttaatttggatagtatcgatcttaacgacaaaaaagttcttgattct
tttaaaaatcttcaaactaacggtatttttcaatttgagtctgaatcggcgaagagcgct
ctaaaacaaattgctgttagtagttttgatgatattgtcgctgtaaatgctctgaatcgt
ccgggcccttcggaaaatattccaatttatgcccaaggaaaaaaagaccccaatcatatc
gagatcatcgataaaagtttgcaaaaaattctcctaccgacttacggtgtaattatttat
caagaacaggtaatgcagattgcgcaggtttatgccggttttacacttggagaagcggat
gtttttagagctgcgattggacacaaaaatgaggaaaaactttttgcccagcatgatgcc
tttattaaaggggcagttgaaaagggccatcaacaagaacaagcggaagaaatctttgcg
tatatagagcgctttgccaattatggttttaataaaagccatgctgttgcgtatagcaaa
ttggcttttgaaatggcttatttaaaaatctactttcccttggaattcttcagtgttctc
ctaaattacgacaccaaaaattcctatctgcaggatattaaaaataaaggcatcaaactt
ttgggaccggacattaatcacgcggaacgtggttttataagcgataaaggggttatttat
gttggcctcggcaaaataaaagggttaaaccgaaaagtgattgatgaaattgtcaaagaa
aggaattcgcacggattgttttccggtctaactgattttcttcaaagaatggctggaagc
gacatcggtgaaagtgacatcgttcaattgacctatgctggttcgctcgatcattttgga
tataaccgtcaggaattaaaaacgaatgccgcttctttaattactgcaatggaattcggc
ggcagccttttaagcgaaacgaaaataagcgcgatcggagaaatgtctttattagaccgt
cttgcgcatgaaaaggaagtccttggtttcactatttccggtcatccaattgacagtctg
agaaaggaaattgttaaaaaaggatatacgcagattaacgatttaaaagctgaccaaata
gtcaaaatggccgttatgatcgattcgattcgtacaactcgcgataagaacggaaatcag
atggcttttgtttcgatttccgacggcagcggagaaagttctttaactgttttcgctcgc
gaatatagtcaaatgtcgggtgttttgaagaatggatctttgattgctttaattggtaga
actcaattaaggaatggtgaaattaatattattgccaataagatccaacagatcggccat
tga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (20)   
   KEGG ORTHOLOGY (1)   
   RefGene (17)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (37)   

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