KEGG   Oceanisphaera profunda: CBP31_05940
Entry
CBP31_05940       CDS       T04856                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
opf  Oceanisphaera profunda
Pathway
opf03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:opf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CBP31_05940
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:opf03021]
    CBP31_05940
   03400 DNA repair and recombination proteins [BR:opf03400]
    CBP31_05940
Enzymes [BR:opf01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CBP31_05940
Transcription machinery [BR:opf03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     CBP31_05940
DNA repair and recombination proteins [BR:opf03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      CBP31_05940
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Peptidase_M23 ApbA_C
Other DBs
NCBI-ProteinID: ART82225
UniProt: A0A1Y0D555
Position
complement(1374771..1378970)
AA seq 1399 aa
MKDLLKFLKAQNKTEEFDGIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESFVVIEAGMTSLERGQMLSEEQYLDALEEWGDEFDAKM
GAEAVLSLLRAIDLGAEIEVMREELGQTNSETKRKKITKRFKLMEAFHGSGNKPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHQCGLPKKMALELFKPFIYGKLEARGLATTIKAAKKMVEREEAVVWDVLDDVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTIEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDKINAKGEGMILTSAKEAEKVYRGG
HAELHAKVKIRITDSERMEDGTEVETTAIRETTIGRAILSLVVPKGLPFSMIDQAMGKKQ
ISKLMNACYRRLGLKESVIFADQLMYTGFQYATLSGVSVGINDLVIPDAKKYIIEEAEAE
VSEIQEQFQSGLVTAGERYNKVIDIWASANERVSKAMMENLSKDKVIDRDGNEVLQDSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIIANFREGLNVLQYFNSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVITTDDCGTFDGLWITSLIEGGDVVEQLRDRVL
GRVVVEDVIRPGTENEILVARNTLLDEKWCDEIEESSVDRIKVRSVITCDNDHGVCAHCY
GRDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAENSIQVKNPGTLK
LVNAKFVTNNDGKTVIVSRSSELTIIDELGQTRENHKLPYGALLEKADGEQVQLGQLVAT
WDPHTHPIVTEVAGHVKFIDMIDGVTISRQTDELTGLSSIVVMDVNERPASGKELRPTVK
LIDDHNNDVIIPGTDLSALYFLPGRSIVSLEDGAVVNVGDAVARIPQESSGTKDITGGLP
RVADLFEARLPKEPAILAEISGTIAFGKETKGKRRLVITPLDGGEPFEEMIHKWRHVNVF
EGEKVEKGEVLADGPESAHDILRLRGISPVANYIVNEVQEVYRLQGVKINDKHIETIVRQ
MLRRAEIMNSGDSDFINGEQAEVVRIRQANRALIAANKQPVEYRHVLMGITKASLSTESF
ISAASFQETTRVLTEAAVSGKVDNLRGLKENVIVGRLVPAGTGFAYHQARNAKRNPDQAV
PVSADEVEQNLANLLNATK
NT seq 4200 nt   +upstreamnt  +downstreamnt
gtgaaagacttacttaagtttttgaaagcgcagaataagacagaagagtttgacgggatc
aaaatcggtctggcatccccagacatgatccgctcttggtcttttggcgaagtcaaaaag
cctgagaccatcaactaccgtaccttcaaaccggagcgtgacggtcttttctgtgcccgg
atttttggtccggtcaaggactatgagtgtctgtgtggtaagtacaagcgcctcaagcat
cgcggtgtgatctgcgaaaaatgcggcgttgaagttacccagaccaaagtgcgccgtgag
cgcatgggccacattgagctggccagtccggttgctcacatctggttcttgaagtccctg
ccaagccgtatcggtttgttgctggacatgacactgcgtgatatcgagcgcgtgctgtac
ttcgaatccttcgtggttatcgaagccggcatgaccagcttagagcgtggtcaaatgctg
tcagaagagcagtatttagacgcgttagaagagtggggcgacgaatttgacgccaagatg
ggtgccgaagcggtactgtctttgctgcgcgctattgatctcggtgccgagattgaagta
atgcgtgaagagctgggtcaaaccaactctgaaaccaagcgtaagaaaattaccaagcgt
ttcaaactgatggaagctttccatggctcaggcaacaagccagagtggatggtgctaacc
gtattaccagtattgccaccggatttgcgtcctttggtaccgctggacggtggtcgcttt
gcgacttctgatctgaacgatttatatcgtcgcgtgatcaaccgtaacaaccgtttgaag
cgtttattagacttagcggcacccgatattatcgtgcgtaacgaaaagcgtatgctgcag
gaatctgtggatgcgttgctcgataacggccgtcgcggtcgtgccatcaccggttctaac
aagcgtcctcttaagtccttggcagatatgatcaagggtaagcagggtcgtttccgtcag
aacttgctcggtaagcgtgttgactactccggtcgttcggtaatcgtagtgggcccgact
ttgcgtctgcaccagtgcggtctgccgaagaaaatggcactcgagctgttcaagccgttc
atctatggcaagttggaagcgcgtggcttagccacgactatcaaagcggccaagaagatg
gttgagcgcgaagaggcggtggtttgggacgtattggatgacgtaattcgtgaacatcca
gtattactgaaccgtgcacctaccttgcaccgtttgggtatccaggcctttgagccagtg
ttgatcgaaggtaaagcgattcagttgcacccattagtgtgtgcggcctataacgccgac
ttcgacggtgaccaaatggcggtccacgtaccgctgaccatagaagcacagcttgaagct
cgtgcacttatgatgtcgaccaacaacatactgtctcctgctaacggcgagccgatcatc
gttccttcacaggacgtagtactgggtctgtattacatgacccgtgacaagatcaacgcc
aaaggcgaaggcatgattttgaccagcgccaaagaagcggaaaaggtttatcgcggtggc
catgctgaactgcatgccaaagtgaaaatccgcatcaccgactctgagcgtatggaagac
ggcactgaagtggaaaccacggctatccgtgagaccactattggtcgtgccatcttgagc
ttggtggtgcctaaaggcttgccttttagcatgatcgaccaagccatgggcaagaagcag
atctctaagctgatgaacgcttgttatcgtcgtttgggcctgaaagagtctgtaatcttt
gctgaccaattgatgtataccggtttccagtacgccactttgtctggcgtgtctgtgggt
atcaacgacttggttattcctgatgcgaaaaaatacatcatcgaagaagccgaagccgaa
gtatctgaaatccaggagcagttccagtctggtttggttaccgcgggcgagcgttacaac
aaagttatcgatatttgggccagcgccaacgagcgtgtgtctaaagcgatgatggaaaac
ttgtcgaaagacaaggtgatcgaccgtgacggtaacgaagtgctgcaagactcgttcaac
agcatttacatgatggccgactccggcgctcgtggtagtgccgctcagatccgtcagttg
gcgggtatgcgtggtctgatggcgaaaccagatggttccatcatcgaaacgccaatcatc
gccaacttccgtgaaggtttgaacgtacttcagtactttaactccacgcacggtgcccgt
aagggtctggcagataccgcattgaagacggctaactccggttacctgactcgtcgtcta
gtagacgtggcgcaagacttggtgatcaccaccgacgactgtggcaccttcgacggtctg
tggatcacttcactgatcgaaggcggcgatgtggttgagcagttgcgtgaccgcgtattg
ggccgagtagtggtcgaagacgtgatccgcccgggtaccgagaatgaaatcttggtggct
cgtaacaccctgctcgatgagaagtggtgtgatgagattgaagagagctcggtagaccgc
attaaagtacgctccgttattacttgtgataacgatcatggcgtatgtgctcattgttac
ggccgtgacttggcccgtggccacttggttaaccaaggcgaagcagtgggcgttatcgcc
gctcagtctatcggtgagccgggtacccagttaacgatgcgtaccttccacatcggtggt
gcagcatcacgagcggcagcagaaaacagtatccaggtgaaaaacccaggtaccttgaag
ctggttaacgcaaagtttgtgactaataacgacggtaagacggtcatcgtgtctcgttct
tctgaactgaccattatcgatgaattgggtcaaacccgtgaaaaccacaaactgccttac
ggtgctttgttggaaaaagcggacggcgagcaggttcaacttggccagttagtggccacg
tgggacccgcacacccacccaatcgttaccgaagtggcaggtcatgttaagtttatcgac
atgattgatggcgtgaccatcagccgtcaaaccgatgaactgaccggtctgtccagcatt
gtagtcatggatgtgaacgaacgtccggcttcaggtaaagagctgcgtccgacagttaag
ctgattgatgatcacaacaacgatgtgattatccccggcaccgacttgtctgcgctgtac
ttcttaccaggccgttcgattgtcagcctagaagatggtgccgtggtaaacgtgggtgac
gcggttgcgcgtattccacaggaatccagtggtacgaaagatatcaccggtggtctacca
cgggttgctgacttgtttgaagcgcgtctaccgaaagagccggctatcttggcggaaatt
tcgggcaccatcgcattcggtaaagagaccaaaggcaagcgccgcttggtgatcacgccg
ttagatggtggcgaaccgtttgaggagatgatccacaaatggcgtcacgtgaacgtgttc
gaaggtgagaaggtcgaaaaaggcgaagtcttggccgatggtccagaatccgcacacgat
atcttgcgtctgcgtggcattagccccgtcgccaactatatcgtgaacgaagtgcaagag
gtttaccgcttgcagggcgttaagatcaacgataaacacattgaaactatcgtgcgtcag
atgctgcgtcgtgccgaaataatgaactcgggcgattccgatttcattaacggtgagcaa
gcagaagtggtacgtattcgtcaggctaaccgtgcgctgattgcggcgaacaagcagcca
gtagaataccgtcatgtattgatgggtatcactaaggcttctttgagcactgaatctttc
atctcggcggcgtccttccaggaaaccactcgagtactgacggaagctgcagtgtccggc
aaagtagataacttgcgcggtctgaaagagaacgtgattgtaggccgactggtacctgcg
ggtacggggtttgcctaccatcaggcacgcaatgccaagcgtaatccagatcaagcagtg
cctgtatcggctgatgaagtcgaacagaatctcgctaatttgttgaacgcgaccaaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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