KEGG   Oceanisphaera profunda: CBP31_11020
Entry
CBP31_11020       CDS       T04856                                 
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
opf  Oceanisphaera profunda
Pathway
opf02024  Quorum sensing
opf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:opf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CBP31_11020
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    CBP31_11020
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:opf03019]
    CBP31_11020
   03036 Chromosome and associated proteins [BR:opf03036]
    CBP31_11020
Messenger RNA biogenesis [BR:opf03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     CBP31_11020
Chromosome and associated proteins [BR:opf03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    CBP31_11020
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: ART83084
UniProt: A0A1Y0D705
Position
2498639..2498899
AA seq 86 aa
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQVESFDQFVILLKNTVSQMVYKHAIS
TVVPARPVQMTPSASAELPASEQQPE
NT seq 261 nt   +upstreamnt  +downstreamnt
atggctaagggacaatctttgcaggacccatttttgaatgcgctgcgccgtgagcgggtc
ccggtctctatttatctagtcaatggcattaagctacaaggacaagtagagtcatttgat
caattcgttatcttactgaaaaataccgtcagccagatggtctataagcacgctatttca
actgtggtgcctgcccgtccggtacagatgacacccagcgccagtgccgagttacctgcg
agcgagcaacaacccgagtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

Download RDF
DBGET integrated database retrieval system