KEGG   Odobenus rosmarus divergens (Pacific walrus): 101366300
Entry
101366300         CDS       T05148                                 
Symbol
PABPC4
Name
(RefSeq) polyadenylate-binding protein 4 isoform X1
  KO
K13126  polyadenylate-binding protein
Organism
oro  Odobenus rosmarus divergens (Pacific walrus)
Pathway
oro03015  mRNA surveillance pathway
oro03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:oro00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    101366300 (PABPC4)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    101366300 (PABPC4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oro03019]
    101366300 (PABPC4)
   03041 Spliceosome [BR:oro03041]
    101366300 (PABPC4)
Messenger RNA biogenesis [BR:oro03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     101366300 (PABPC4)
   mRNA cycle factors
    Stress granule specific factors
     101366300 (PABPC4)
Spliceosome [BR:oro03041]
 Complex C
  Other components
   Complex C specific factors
    101366300 (PABPC4)
SSDB
Motif
Pfam: RRM_1 PABP RRM_5 RRM_7 RRM_occluded RRM_3 ApbA_C
Other DBs
NCBI-GeneID: 101366300
NCBI-ProteinID: XP_004402672
UniProt: A0A2U3W3R3
Position
Unknown
AA seq 660 aa
MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEK
HEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRP
PYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSALRQSGPRPALRHLAPTGNAPASRGLPTA
AQRVGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPPAVQTLAPRAAVAATAPRAVAPYK
YASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHS
NLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAAATS
NT seq 1983 nt   +upstreamnt  +downstreamnt
atgaacgctgcggccagcagctaccccatggcctccctctacgtgggtgacctgcactcg
gacgtcaccgaggccatgctgtatgaaaagttcagtcctgcggggcctgtgctgtccatc
cgggtctgccgcgatatgatcacccgccgctccctgggttatgcctacgtcaacttccag
cagccggctgacgctgagcgggccttggataccatgaactttgatgtgattaagggaaag
ccaatccgtatcatgtggtctcagagggatccctctttgagaaaatctggtgtgggaaac
gtcttcatcaagaatctggacaaatctatagataacaaggcactttatgatactttttct
gcttttggaaacattctgtcttgcaaggtggtgtgtgatgagaacggctctaagggttat
gcctttgtccacttcgagacgcaagaggctgctgacaaggccatcgagaagatgaacggc
atgctcctcaatgaccgcaaagtgtttgtgggcagattcaagtctcgaaaagagcgggaa
gctgagcttggagccaaagcgaaggagttcaccaatgtttatatcaaaaactttggggaa
gaggtggatgatgagagtctgaaagagctttttagccagtttggtaagaccctaagtgtc
aaggtgatgagagatcccagtgggaaatccaaaggctttggctttgtgagttacgaaaaa
cacgaggatgccaataaggctgtggaagagatgaatggaaaagaaatcagtgggaaagtg
atttttgtaggccgtgcccagaagaaagtggaacggcaggctgagttaaagcggaaattt
gaacagctaaaacaagagagaattagtcggtatcagggggtgaatctctacattaagaac
ttggatgacaccattgatgatgagaagttaaggaaagagttttctccttttggatcaatc
accagtgctaaggtaatgttggaggatgggagaagcaaagggtttggctttgtctgcttc
tcatctcctgaagaggcaaccaaagcagtcaccgagatgaacggacgcatcgtgggctcc
aagccactatatgtcgccctggcccagaggaaggaagagcgaaaggctcacctgaccaac
cagtacatgcagcgggtggctggaatgcgagcactccctgccaatgccatcttaaatcag
ttccagcctgcagccggtggttacttcgtgccagcagtcccacaggcccagggaagacct
ccatattacacacccaaccagttagcacagatgaggcctaacccccgctggcagcaaggt
gggagacctcaaggcttccaaggaatgccaagtgctctacgccagtctgggccccgtccc
gcccttcgccatctggctccaactggtaatgctccggcctctcgcggcctccctactgcc
gctcagagagtcgggtctgagtgcccggaccgcttggctatggactttggtggggctggc
gccgcccagcaagggctgactgacagctgccagtctggaggtgttcccccagccgtgcag
accttagcacctcgtgctgctgtcgctgctactgcccctcgggctgtcgcaccttacaaa
tatgcctccagtgtccgcagccctcaccctgccatccagcccctgcaggcgccgcagcct
gcggtccatgtgcaggggcaggagcccctgactgcctccatgctggccgcagcgcccccc
caggagcaaaagcagatgctgggagaacgtttgttcccgctcatccaaaccatgcattca
aacctggctgggaaaatcacgggcatgctgctggagatcgacaactctgagctgctgcac
atgctcgagtcccccgagtcgctccgctccaaggtggatgaagctgtggcggttctgcag
gctcatcatgccaagaaagaagctgcccagaaggtgggcgctgttgccgctgctacctct
tag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (42)   
   KEGG ORTHOLOGY (1)   
   RefGene (38)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (7)   
   UniProt (1)   
   RefSeq(pep) (6)   
DNA sequence (7)   
   RefSeq(nuc) (7)   
Protein domain (7)   
   Pfam (7)   
All databases (69)   

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