KEGG   Oryza sativa japonica (Japanese rice) (RefSeq): 3131433
Entry
3131433           CDS       T01015                                 
Symbol
rpoC1, OrsajCp016
Name
(RefSeq) RNA polymerase beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
osa  Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    3131433 (rpoC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osa03021]
    3131433 (rpoC1)
   03400 DNA repair and recombination proteins [BR:osa03400]
    3131433 (rpoC1)
Enzymes [BR:osa01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     3131433 (rpoC1)
Transcription machinery [BR:osa03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     3131433 (rpoC1)
DNA repair and recombination proteins [BR:osa03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      3131433 (rpoC1)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3
Other DBs
NCBI-GeneID: 3131433
NCBI-ProteinID: NP_039374
UniProt: P0C506 A0A0K0LR88
Position
Pltd:22479..24527
AA seq 682 aa
MIDQYKHQQLQIGLVSPQQIKAWANKTLPNGEVVGEVTRPSTFHYKTDKPEKDGLFCERI
FGPIKSRICACGNSRASGAENEDERFCQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
GLPSYIANLLDKPLKKLEGLVYGDFSFARPSAKKPTFLRLRGLFEDEISSCNHSISPFFS
TPGFTTFRNREIATGAGAIREQLADLDLRIILENSSVEWKELEDEGYSGDEWEDRKRRIR
KVFLIRRMQLAKHFIQTNVEPEWMVLCLLPVLPPELRPIVYRSGDKVVTSDINELYKRVI
RRNNNLAYLLKRSELAPADLVMCQEKLVQEAVDTLLDSGSRGQPTRDGHNKVYKSLSDVI
EGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHQCGLPLEIAIKLFQLFVIRDLITKRAT
SNVRIAKRKIWEKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPTLVEGRTICLHP
LVCKGFNADFDGDQMAVHLPLSLEAQAEARLLMFSHMNLLSPAIGDPICVPTQDMLIGLY
VLTIGNRRGICANRYNSCGNYPNQKVNYNNNNPKYTKDKESLFSSSYDALGAYRQKQICL
DSPLWLRWKLDQRVIGLREVPIEVQYESLGTYREIYAHYLVVGNRKKEIRSIYIRTTLGH
ISFYREIEEAIQGFSQAYSYTI
NT seq 2049 nt   +upstreamnt  +downstreamnt
atgattgaccaatataaacatcaacaacttcaaattggactcgtttcccctcaacaaata
aaggcttgggctaacaaaacactacctaatggggaagtcgttggcgaagtcacaaggccc
tccacttttcattataaaaccgataaaccagaaaaagatggattgttttgcgaaagaatc
tttggacccataaaaagcagaatttgtgcttgtggaaattctcgagcgagcggagctgaa
aacgaagacgaaagattttgccaaaaatgcggagtagaatttgttgattctcggatacga
agatatcaaatgggatacatcaaactcgcatgtcccgtgactcatgtgtggtatttaaaa
ggtcttcctagttatatcgcgaatcttttagataaaccccttaagaaattggagggccta
gtatatggcgatttctcttttgctaggcccagtgctaaaaaaccaactttcttacgatta
cgaggtttattcgaggatgaaatttcatcctgtaaccatagcatttccccctttttttct
accccaggctttacaacatttcgaaatcgggaaattgcgacaggagcaggtgctattaga
gaacaattagcagatttggatttgcgaattattttagagaattcctcggtcgaatggaag
gaattagaagacgaggggtatagtggagatgaatgggaagatagaaaaagacgaataaga
aaagtttttttgattagacgcatgcaattggcgaaacattttattcaaacaaatgtagaa
ccagaatggatggttttgtgcttattaccagttcttcctcccgaattaagacccattgtt
tataggtctggggataaagtagtgacttcggatattaatgaactttataagagagttatc
cgtcggaacaacaatcttgcctatctattaaaaagaagtgaattagcgccagcagattta
gtaatgtgccaggaaaaattggtacaagaagccgtggatacacttcttgatagtgggtcc
cgcgggcaaccaacgagggatggtcacaataaagtatacaaatcactttcagatgtaatt
gaaggtaaagaggggaggtttcgcgaaactctgcttgggaaacgggtcgattactcgggg
cgttctgtcattgttgtgggtccttcactttcattacatcaatgtgggttacctctagag
atagcaataaagctttttcagctatttgtaattcgcgatttaatcacgaaacgtgctact
tctaatgttaggattgctaaaaggaaaatttgggaaaaggaacccattgtatgggaaata
cttcaagaagttatgaggggacatcctgtactgttgaatagagcacctaccctgcataga
ttaggcatacaggctttccaacccactttagtagaggggcgtactatttgtttacaccca
ttagtgtgtaaaggtttcaatgcagactttgatggggatcaaatggctgttcatctacct
ttatccttggaagctcaggcggaagctcgtttacttatgttttctcatatgaatctccta
tctcccgctattggggatcctatttgcgtaccaacccaagacatgcttatcggactttat
gtattaacgattggaaaccgtcgaggtatttgtgcaaatagatataatagttgcggaaac
tatccaaaccaaaaagtaaattacaataataataatcctaagtatacgaaagataaagaa
tctcttttttctagttcctatgatgcactgggagcttatagacagaaacaaatctgttta
gacagtcccttgtggctccgatggaaactagatcaacgcgtcattgggttaagagaagtt
ccgattgaagttcaatatgaatctttggggacttatcgtgagatttatgcccactatcta
gtagtgggaaatagaaaaaaggaaatccgttctatatacattcgcaccactcttggtcat
atttctttttatagagaaatagaggaagccatacaaggatttagtcaggcctattcatac
actatctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   RefGene (22)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (41)   

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