KEGG   Oryza sativa japonica (Japanese rice) (RefSeq): 4333165
Entry
4333165           CDS       T01015                                 
Name
(RefSeq) probable ubiquitin conjugation factor E4
  KO
K10597  ubiquitin conjugation factor E4 B [EC:2.3.2.27]
Organism
osa  Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa04120  Ubiquitin mediated proteolysis
osa04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    4333165
   04120 Ubiquitin mediated proteolysis
    4333165
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:osa04121]
    4333165
Enzymes [BR:osa01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     4333165
Ubiquitin system [BR:osa04121]
 Ubiquitin ligases (E3)
  U-box type E3
   4333165
SSDB
Motif
Pfam: Ufd2P_core U-box
Other DBs
NCBI-GeneID: 4333165
NCBI-ProteinID: XP_015631507
UniProt: Q75I67 A0A0P0VZW9
Position
3:17884897..17892015
AA seq 1036 aa
MASPSPAARPQRTPDEVEDIITRKILLVSLTPPSTPNPAVAYLELTAAELLSESRPLLAL
RDASERLLIDRLSLPDQPAGSPSPFAYLVSSFRRAADEARKISTIRDAALRARLAASIAH
LRGLILSYARIVAGNPDTFPSPHNAPHPAAELLVFHLAEAADPLDPTPAPGAPPPPGFLD
EFFANADYETVEPAMGELYGRLRQSVEKVSALGDFQKPLRVLRRLVGIPNCAKALVNHPR
WIPKNQIMLIGEGRIMEISSVLGAFFHVSAIPDREFASKPDIGQHCFSEASSRRPADLMS
SFTTIKSVMNNLYDGLKDVLLALLKNMDTREKVLEFIAEVINKNAGRSRMQVDPLKSASS
GMFVNLSAVMLRLCEPFLDRMESKKDKIDVNYLFCNDRIDFKNLTAINASSEEVSSWIEN
RGYEHAEDSASGEARFVESQEATSSGNNSTVSLSSKGGSLVNCSKKENFSFICECFFMTA
RVLNLGLMKALSDFKHIAQDLARCQDDLDSNRAMRDQGGGSAQLDQDIKRLEKIVEILSQ
DKLCYEAQIIRDGAFLQRALSFYRLMILWSVDLVGGFKMPLPSQCPKEFACIPEHFLDDA
MDLLVLTSRIPKALESFALDDFLNFIIMFMAGTSYIKNPYLRAKMVEVLNCWMPQRSGLS
STASLFEGHQLCLDYLVKNLLKLYVDIEFTGSHTQFFDKFNIRHNIAELLEYLWDVPSHR
NAWRRIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKEIEAEMANVVEWESRPPQE
REERLRVFHQWENVVRFDMKLANEDVGMLAFTSEQIPAPFLLPEMVERVASMLNYFLLQL
AGPQRKSLTVKDPEKYEFKPKQLLKQIATIYVHITRGDKEGIFPAAISKDGRSYNEQLFA
SAANILWKIGGDPQIIQEFMQLASKSKTAASEAMDAEAMLGDIPDEFLDPIQYTLMKDPV
ILPSSRVTIDRPVIVRHLLSDSTDPFNRSHLTQDMLIPDTELKSRIEEFIRSQRSKKRTA
ADSEMGEPDGAADMAD
NT seq 3111 nt   +upstreamnt  +downstreamnt
atggcgtccccgtccccggcggcgcggccgcagcggacgcccgacgaggtggaggacatc
atcacgcgcaagatcctcctcgtctccctcaccccgccctccacgcccaacccggccgtc
gcctacctcgagctcaccgccgccgagctcctctccgagtcgcgcccgctcctcgccctc
cgcgacgcctccgagcgcctcctcatcgaccgcctctccctcccggaccagcccgccggg
tccccctcccccttcgcctacctcgtctcctccttccgccgcgccgccgacgaggcccgc
aagatctccaccatccgcgacgccgccctccgcgcgcgcctcgccgcctccatcgcgcac
ctccgcggcctcatcctctcctacgcccgcatcgtcgccgggaaccccgacaccttccct
tcgccgcacaacgcgccccaccccgccgccgagctgctcgtcttccacctggccgaggcc
gccgacccgctcgaccctaccccggcccctggtgccccgccgccgccggggttcctcgac
gaattcttcgccaacgccgattacgagaccgtcgagccggccatgggcgagctctacggc
cgcctcaggcaaagcgtcgagaaggtgtcggcgcttggcgacttccagaagccgctgcgg
gtgctcaggcggctggtgggaatccctaactgcgcaaaggctctggtgaatcaccccagg
tggataccgaagaatcaaattatgctcattggggaagggagaatcatggagatctccagt
gtgctcggggcgttcttccatgtcagtgcgatccctgaccgcgagtttgcaagcaagcct
gatattgggcaacattgcttctcagaggcatcttcacgcagaccagctgatttgatgtca
tcttttacaacaatcaaaagcgttatgaataacttgtatgatggccttaaggatgttctt
cttgcgctgctaaaaaatatggatactcgagaaaaggttctcgagtttattgctgaagtg
ataaataaaaatgcaggcagatctcgtatgcaggtagaccctttaaagagtgccagctca
ggtatgtttgtgaatctcagtgccgtgatgctacgtctatgtgagccttttctggatagg
atggagtctaagaaggacaagattgatgtcaattacctcttctgcaacgatagaattgat
ttcaagaatttgactgcaataaatgcttcttccgaggaagtatcatcttggatagagaac
aggggctatgagcatgctgaagatagtgccagtggagaggctcgctttgttgaatcacaa
gaagcgacaagctctggcaacaatagcacagtttctctttcttctaaaggcgggtcactt
gtgaattgctcaaagaaagagaatttctcatttatttgtgaatgcttcttcatgactgca
agggtgctcaatctggggctgatgaaagctctatcggatttcaaacatattgctcaggat
ctcgcaaggtgccaagatgacttggattcaaacagagcaatgagagatcaaggaggtggt
tcagcacagcttgatcaagatataaaacgcttagagaagatagttgagattttatcacag
gacaaactctgttatgaagctcagataattagggatggtgcatttcttcaacgtgcacta
tctttctacagattaatgatactatggtcagtagaccttgttggcggatttaagatgcct
ttgccatcacaatgtccaaaggaatttgcttgcattccagagcatttcctcgatgatgca
atggatttactagttctaacctctagaattccaaaagctttggaaagctttgcgttggat
gactttctcaacttcatcattatgttcatggcgggcacttcatacattaaaaatccttac
cttagagcaaagatggttgaagttttgaattgctggatgccacaaagaagtgggttgagt
tctacagcctcattatttgaggggcaccaactatgtctcgattacctggtcaaaaatctt
ctaaagctttatgtggatattgaattcactggttcccatacacaattctttgacaagttt
aacattcgacataatattgctgagcttctagagtatctatgggatgtccccagtcatcgg
aatgcatggagacgaatagctaaagaggaggagaagggcgtatatttaaattttttgaac
ttccttatcaatgatagcatctatcttcttgatgagagtttgaacaaaatcctcgaactg
aaagaaatagaggctgaaatggctaatgttgtagagtgggaaagcaggccacctcaagaa
agagaggagagattgcgtgtatttcatcagtgggagaatgttgttcgatttgacatgaag
ctagcaaatgaggatgttgggatgcttgctttcacgtcagagcagattccagcacctttc
ctccttcctgaaatggtggaaagggtggcaagcatgctaaattacttcctcttgcaactt
gctggtcctcagaggaaatcattgactgtaaaagatcctgaaaagtatgagttcaagccg
aagcagctcttgaaacagattgccaccatctatgtccatatcacaaggggtgataaagaa
ggtatattcccagcagccatctcaaaagatggaagatcatacaatgagcagttgtttgca
agtgcagcaaatattttgtggaagattgggggagacccccaaatcatacaggagtttatg
caacttgccagtaagtcaaaaactgctgcttctgaggcaatggatgctgaggctatgctt
ggtgacataccagatgaatttcttgatccaattcagtatactctgatgaaggatcctgta
atactaccatcatcacgggtgacaatagatcgtcccgttattgttaggcacttgctaagt
gacagtactgatccgttcaaccgttctcaccttacgcaagacatgttgataccggataca
gagctcaagtcgcgcatcgaagagtttatcaggtctcaacggtccaaaaaacgaactgct
gccgattcagaaatgggagaacctgatggggctgctgatatggctgattga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (30)   
   KEGG ORTHOLOGY (1)   
   RefGene (25)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (45)   

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