KEGG   Oryza sativa japonica (Japanese rice) (RefSeq): 4339794
Entry
4339794           CDS       T01015                                 
Name
(RefSeq) DNA damage-binding protein 1a isoform X1
  KO
K10610  DNA damage-binding protein 1
Organism
osa  Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03420  Nucleotide excision repair
osa04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    4339794
  09124 Replication and repair
   03420 Nucleotide excision repair
    4339794
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:osa04121]
    4339794
   03400 DNA repair and recombination proteins [BR:osa03400]
    4339794
Ubiquitin system [BR:osa04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Adoptor protein
     4339794
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      4339794
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      4339794
SSDB
Motif
Pfam: MMS1_N CPSF_A
Other DBs
NCBI-GeneID: 4339794
NCBI-ProteinID: XP_015639287
UniProt: Q6L4S0
Position
5:29511860..29520023
AA seq 1090 aa
MSVWNYVVTAHKPTSVTHSCVGNFTGPNQLNLIVAKCTRIEIHLLTPQGLQPMIDVPIYG
RIATLELFRPHNETQDFLFIATERYKFCVLQWDGEKSELLTRAMGDVSDRIGRPTDNGQI
GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCVKPTIVVL
YQDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGAGLLIPVPAPLGGVIIIGEETIVYC
NANSTFRAIPIKQSIIRAYGRVDPDGSRYLLGDNAGILHLLVLTHERERVTGLKIEYLGE
TSIASSISYLDNGVVYVGSRFGDSQLVKLNLQADPNGSYVEVLERYVNLGPIVDFCVVDL
DRQGQGQVVTCSGAFKDGSLRVVRNGIGINEQASVELQGIKGLWSLKSSFNDPYDMYLVV
SFISETRFLAMNMEDELEETEIEGFDAQTQTLFCQNAINDLLIQVTANSVRLVSCTSREL
VDQWNAPEGFSVNVASANASQVLLATGGGHLVYLEIKDSKLVEVKHIQLEHEISCVDLNP
IGENPQYSSLAAVGMWTDISVRILSLPDLELIRKENLGGEIVPRSVLLCTLEGVSYLLCA
LGDGHLFSFLLNASTGELTDRKKVSLGTQPISLRTFSSKGTTHVFASSDRPTVIYSSNKK
LLYSNVNLKEVNHMCPFNTAAIPDSLAIAKEGELSIGTIDDIQKLHIRTIPLNEQARRIC
HQEQSRTLAFCSFKHNQTSIEESETHFVRLLDHQTFEFLSIYQLDQYEHGCSIISCSFSD
DNNVYYCVGTAYVLPEENEPSKGRILVFAVEDGRLQLIVEKETKGAVYSLNAFNGKLLAA
INQKIQLYKWMLREDGSHELQSECGHHGHILALYTQTRGDFIVVGDLMKSISLLVYKHEE
SAIEELARDYNANWMSAVEMLDDEIYIGAENNYNIFTVRKNSDAATDEERGRLEVVGEYH
LGEFVNRLRHGSLVMRLPDSEMGQIPTVIFGTINGVIGIIASLPHEQYVFLEKLQSTLVK
FIKGVGNLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLSRNKMEEVAKGMGVPVEELS
KRVEELTRLH
NT seq 3273 nt   +upstreamnt  +downstreamnt
atgagcgtgtggaactacgtcgtgacggcgcacaagcccaccagcgtcacccactcctgc
gtcggcaacttcaccggccccaaccagctcaacctcatcgtcgcgaaatgcacccgtatc
gagatccacttgcttactcctcaaggcctccagcctatgattgatgtacctatctatgga
agaatcgccacactagagctcttccgccctcataatgagactcaggacttccttttcatt
gcgactgaaagatacaaattctgtgttctgcagtgggatggagaaaaatcggagcttctc
actagagcgatgggagatgtttctgatcgcattggtcgccctacggacaatggacagatt
gggatcatcgaccctgactgtagacttattggtcttcacctctacgatggattatttaag
gttataccgtttgataacaaagggcagctgaaggaagctttcaatatcaggcttgaagaa
cttcaagtattggacatcaagttcctgtatggctgtgttaaacctactatagttgtcctc
taccaggataacaaagatgcaagacatgttaagacatatgaagttgcattgaaggacaaa
gactttgttgagggtccttggtcgcagaacaatttagacaatggtgctggtctgttaata
cctgtaccagctcctcttggtggtgtcataattattggtgaggagacaatagtttactgc
aatgccaactctacatttagagctataccaatcaaacagtcaatcataagagcttacgga
cgggttgacccagacggttcgcgctatttacttggtgataatgcaggcatattgcattta
cttgtccttacccatgaacgagagagggtaaccggtctgaaaatcgagtacttgggagag
acttcaattgcatcatcaatatcatatctcgataatggtgttgtctacgttggttctcga
tttggtgattcacagcttgtaaaactaaatctccaagctgacccaaatggttcatatgtt
gaagttcttgagcgatatgtgaaccttggacccatcgtggacttctgtgtggttgacctt
gacaggcagggtcagggtcaggttgtcacttgttcaggagcatttaaagatggttccctt
cgggtggttcggaatgggataggtatcaatgagcaggcttcagtagaactacaagggatc
aagggtttatggtcgttgaaatcttccttcaatgatccgtatgacatgtacctagttgtg
agctttataagcgagacaagattcttggctatgaacatggaagatgagttagaagaaact
gagatagaaggctttgatgcgcagactcagactttgttttgtcaaaatgccatcaatgat
ctgcttatacaggttactgctaattctgttcgtctggttagttgtacctctcgggagcta
gtggatcaatggaatgcaccagaaggattttcagtcaatgttgcatcagctaatgccagt
caggttctgctggcaacaggtggtggccatcttgtttacctcgaaattaaggattctaag
ctggttgaagtgaaacatatacagttagaacatgagatctcctgtgttgatttgaatcca
attggggagaatccacagtatagctctctggctgctgttgggatgtggactgatataagt
gttagaatactttcacttccagaccttgaattaatcaggaaggagaacttaggtggagaa
attgttcctcggtctgttctgctttgtaccttggaaggggtttcatatttgctctgtgct
cttggagatggtcatctgttcagttttctgttgaatgcaagtacgggtgaattaactgat
agaaagaaggtttctcttggtacccaaccgataagccttcgtacattctcatcaaagggt
acaacccacgtgtttgcttcatcggatagaccgactgttatttatagcagcaacaagaag
ttgctgtatagcaatgtcaatttgaaggaagtcaaccatatgtgtccttttaatacagct
gctattcctgacagccttgcaattgctaaagaaggtgaactctcaattggaaccatcgat
gacatccagaagcttcatatccgtacaatccccttgaatgaacaagcacgtcgcatttgc
catcaggaacagtccaggacactagcgttctgcagcttcaagcacaaccagactagtata
gaggaaagcgagacacattttgttcgtcttttggatcatcaaacttttgagttcctgtca
atttatcagcttgatcaatatgagcatggctgctccatcattagctgctcattctcagat
gataataatgtttattattgtgtgggaacagcatatgttttaccagaggaaaatgaacca
tcaaagggccggatccttgtatttgcagttgaagatggcagactgcaattaattgtagag
aaagaaactaaaggagctgtctattcgctgaatgcattcaacggaaaattgttggcagct
atcaaccagaagattcaactatataagtggatgctacgggaggacggttcacatgagctg
cagtctgagtgtgggcatcatgggcacatattggctttgtacactcagactcgtggcgat
ttcattgtagttggagacttgatgaaatcaatatccttgctcgtgtacaagcacgaggaa
agtgcgattgaagagcttgctagggattacaatgcaaactggatgagtgcagttgagatg
cttgatgacgagatctatattggagcagagaataactacaacattttcactgtgcggaag
aacagtgatgcagcgacagatgaagagaggggcaggctggaggttgttggagagtaccat
cttggagagtttgtgaatagactccggcatggttcgctggtaatgcggcttccggactca
gagatgggccagatcccgacggttatctttggcaccatcaacggggttattgggattatt
gcttcgcttccacatgagcagtatgtatttcttgagaagctccagtcgactctggtgaag
ttcataaagggcgtggggaacctgagccatgagcaatggcggtcgttccacaacgacaag
aagacgtcggaggcccgcaatttcctggatggtgacctgatcgagtcattccttgatcta
agcagaaacaagatggaggaggtggccaagggtatgggggtccccgttgaggagctatcc
aagagggtggaggagctgactagattgcactag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (80)   
   KEGG ORTHOLOGY (1)   
   RefGene (75)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (6)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (4)   
DNA sequence (26)   
   RefSeq(nuc) (4)   
   GenBank (11)   
   EMBL (11)   
Protein domain (2)   
   Pfam (2)   
All databases (120)   

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