KEGG   Oryza sativa japonica (Japanese rice) (RefSeq): 4345225
Entry
4345225           CDS       T01015                                 
Name
(RefSeq) formamidopyrimidine-DNA glycosylase isoform X1
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
osa  Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    4345225
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:osa03400]
    4345225
Enzymes [BR:osa01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     4345225
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     4345225
DNA repair and recombination proteins [BR:osa03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     4345225
SSDB
Motif
Pfam: H2TH Fapy_DNA_glyco Fpg-like_C NFACT_N TFIIF_alpha Cwf_Cwc_15 PsbP_2
Other DBs
NCBI-GeneID: 4345225
NCBI-ProteinID: XP_015651002
UniProt: B9G081
Position
8:12710733..12719263
AA seq 415 aa
MPELPEVEVARRALEEHCVGKRIVRCSAADDTKVIDGVAPPRLEAALVGRTISAARRKGK
NLWLALDSPPFPSFQFGMAGAIYIKGVELSKYKRSAVSPTEEWPLKYSKLLVVMDDGLEF
SFTDKRRFAKIRFLDNPEAVPPISELGPDALFEPLHLDDFVESLSRKKAPIKALLLDQSF
ISGIGNWIADEVLYQARIHPMQTASMISKEKCKALHQCIIEVIEKSLEVGCNSSQYPENW
IFHSREKKPGKAFVEGKKIDFITVGGRTSAYVPELQKLDGIDATASRAKISKEQSKSNKA
AREVDDDEEEAKPAKRGRKQLVKATHEIQEDEEDTKESKRGRKQPAKTSKGSWKKAHHSS
EGSGDDDSDDEAVDKVVAEQGKRRDPKQPAEAKSSSDKGGSAAPAKRPQRKKRQL
NT seq 1248 nt   +upstreamnt  +downstreamnt
atgccggagctgccggaggtggaggtggcgcgacgggcgctggaggagcactgcgtcggg
aagaggatcgtgcggtgctcggctgcagatgacaccaaggtcatcgacggcgtcgccccg
ccgcggctggaggcagcgcttgtcgggaggaccatctccgctgctcgccgcaagggcaag
aatctgtggcttgcgcttgattctccgcccttcccttccttccagttcggaatggctgga
gctatttacatcaagggtgtggaactgagcaaatacaaaaggtctgcagtgagcccgact
gaggaatggcctttgaagtattccaagctgcttgttgtaatggatgatggtttggagttt
tccttcactgataagaggcgttttgcaaaaattcgctttcttgacaatccagaagctgtc
ccaccaatttctgagcttggaccagatgccttatttgaacctcttcatcttgatgatttt
gtagagtcactaagtaggaaaaaagctccaataaaagcccttttgcttgatcagagcttt
atatcaggaattggcaattggattgcagatgaagtgctttatcaggcaaggattcatcca
atgcaaacagcatcgatgatttctaaggagaaatgcaaggcactccatcagtgcattata
gaggtgattgaaaagtccttagaagttggttgcaacagcagtcagtatccagaaaactgg
atatttcactccagggagaagaaacccggcaaggcctttgtggaggggaagaaaattgac
ttcattacagttggtggcaggacttcagcatatgtgccagagttgcagaagctggacggg
attgatgcaacagcaagcagagcgaaaataagcaaagaacagagcaaatcaaataaagct
gctcgtgaagtggacgatgatgaggaagaggctaaacctgccaagaggggaaggaagcaa
ttagtgaaggcaacccatgagatccaagaggatgaggaagatacaaaagaatcaaagaga
ggaaggaagcaaccagcaaagacatcgaagggctcgtggaagaaagctcatcattcttct
gagggtagtggtgacgacgacagtgatgatgaagcagttgataaggtggtcgcggaacaa
gggaagaggagggatccaaagcaaccagcagaggcgaaaagctcgtcagacaaaggagga
agtgctgccccagcaaagaggccacagaggaagaagcggcaattatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (7)   
   Pfam (7)   
All databases (34)   

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