KEGG   Oryza sativa japonica (Japanese rice) (RefSeq): 4346861
Entry
4346861           CDS       T01015                                 
Name
(RefSeq) THO complex subunit 6
  KO
K13175  THO complex subunit 6
Organism
osa  Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    4346861
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4346861
   03041 Spliceosome [BR:osa03041]
    4346861
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     4346861
Spliceosome [BR:osa03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    4346861
SSDB
Motif
Pfam: WD40 NBCH_WD40 v110 Hira
Other DBs
NCBI-GeneID: 4346861
NCBI-ProteinID: XP_015651496
UniProt: A3BY22
Position
9:complement(11909055..11912719)
AA seq 380 aa
MAAAALAGMDARGWDEAAYRRGILRERDLSCRTLFRAVFFDHHDDDPDVLLAAASSDGSL
ASFSLSSCISSSSSHPTPQTHPDAAVSLVDPVCIVQAHSGPAYDVRFYPDSQQPLLFSGG
DDGRLRGWRWHEMQSCLVPLSLQGDHLEPVLDLVNPQHEGPWGARSPIPENNAIAINKQE
GSVYAAAGDACAYCWDVESGKCKMTFKGHTDYLHSIAVREANRQVVTGSEDGTARIWDCR
SGKCTQVIRPVKNKIFEGSWVSCVAIDASESWLACGTSSGISVWSLLSNECIFNVDCHAP
VQDLLFDRNQILAVGAEPLLSRFSINGTLLSQIKCAPHSAFSVSIHSSGMAAVAGYGGLV
DVISQFGSHLCTFGCRSLDK
NT seq 1143 nt   +upstreamnt  +downstreamnt
atggcggcggcggcgttggcggggatggacgcgcgggggtgggacgaggcggcgtacagg
cggggcatcctgcgggagcgggacctctcctgccgcaccctcttccgcgccgtcttcttc
gaccaccacgacgacgaccccgacgtcctcctcgccgccgcctccagcgacggctccctc
gcctccttctccctctcctcctgcatctcctcctcctcctcccatcccaccccacagacc
cacccggatgccgcggtctctctggttgatcccgtctgcatcgtccaagcgcacagtggc
ccggcctacgacgtcaggttctacccggattcgcagcagccgctgctcttcagcggcggg
gatgacgggcgccttcggggatggagatggcacgagatgcagagctgccttgtgccgcta
tctctgcaaggggatcatttggagccagtacttgatttggtgaaccctcagcatgagggt
ccttggggtgctcgctctccaatacctgaaaacaacgccattgcgattaacaaacaggaa
ggatctgtttatgcagcggccggggatgcatgtgcttattgctgggatgtggagagtggt
aaatgtaaaatgaccttcaagggacatactgactatttgcacagcattgcagtccgcgaa
gcgaaccgccaggtagttacaggatcagaggatggcacagcccgtatctgggattgcaga
agtggaaagtgcactcaggttatacgtccggtgaaaaacaagatttttgaggggtcatgg
gtcagttgtgttgccattgatgcaagtgaaagctggctggcttgtggtacttctagtggt
atatcagtttggagccttctttcaaatgagtgcatctttaatgtggattgccatgctcct
gttcaagatttgctgtttgacagaaaccaaatcttagcagtcggtgctgaacctctgctc
tctcgtttctctatcaatgggactcttctttcacaaatcaagtgtgctcctcactcagca
ttttctgtctccatacattcttcagggatggcagctgttgctggatatggaggccttgtg
gatgtaatatcacaatttgggagtcatttgtgcacttttggctgccggagcctggataag
taa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (4)   
   Pfam (4)   
All databases (33)   

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