KEGG   Oryza sativa japonica (Japanese rice) (RefSeq): 4349924
Entry
4349924           CDS       T01015                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
  KO
K12598  ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
Organism
osa  Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    4349924
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4349924
   03041 Spliceosome [BR:osa03041]
    4349924
   03009 Ribosome biogenesis [BR:osa03009]
    4349924
   03016 Transfer RNA biogenesis [BR:osa03016]
    4349924
Enzymes [BR:osa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     4349924
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     4349924
Spliceosome [BR:osa03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    4349924
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    4349924
Ribosome biogenesis [BR:osa03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    4349924
Transfer RNA biogenesis [BR:osa03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    4349924
SSDB
Motif
Pfam: MTR4_beta-barrel DSHCT DEAD MTR4-like_stalk Helicase_C ResIII nSTAND3 ATPase_2 FlxA
Other DBs
NCBI-GeneID: 4349924
NCBI-ProteinID: XP_015617002
UniProt: B9G9P0 Q53PH9
Position
11:complement(3801449..3808587)
AA seq 1003 aa
MEEVENTSKRKAPESEHAAAVSGEHPPPPPPPDAAAKRRNLSRSCIHEVAVPKGYAAAKD
EAVHGTLSSPAFHGEMAKAYPFQLDPFQSVSIACLERNESVLVSAHTSAGKTAIAEYAIA
MSFRDKQRVIYTSPLKALSNQKYRELSQEFSDVGLMTGDVTLQPNATCLVMTTEILRAML
YRGSEVIKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWI
CNLHKQPCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDEDGQFREDNFLKLQDTFTKQSNQ
VDGRKGGGPKASGRIAKGGSASGNSDIYRIVKMIMERKFQPVIIFSFSRRECEHHAMSMS
KLDFNTDEEKDNIEQVFSSAILCLSEEDRGLPAIELMLPLLKRGIAVHHSGLLPLIKELV
ELLFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDTNRYIASGEYIQMSGRAGRR
GKDIRGICVIMIDEKMEMSVIKDMVLGKPAPLVSTFRLSYYTILNLMSRVEGQFTAEHVI
RNSFHQFQYEKALPEVVQKITSLENEATLLDSSGETDLAEYHKLGLDISELEKKIMSEMI
RPERALLYLVPGRLVKVRDGSTDWGWGVVVNVVKKPPQSGTLPPALSASRGNNYIVDTLL
HCSSSSNENGSRSKPLPPRPGEKGEMHVVPVPLPLLSGLSSVRINIPPDLRPPEARQNIL
FAVQELGKRYPQGLPKLDPIKDMGLQEPELVELVHKLDDLEQKLCSHPLHKSDQSEQQLS
WYQRKAELNHEIQMLKSKMRDSQLQKFRDELRNRSRVLKMLGHIDADGVLQLKGRAACLI
DTGDELLITELMFNGTFNDLDHHQVASLASCFIPCEKSSEQIRLRSELSTPMMQLQEAAR
KIAEVQKECKLEVNVEEYVESTCRPYLMDVIYCWSKGATFGEVIEMTDIFEGSIIRLARR
LDEFLNQLKAAAQAVGEVNLENKFGAASDSLRRGIMFANSLYL
NT seq 3012 nt   +upstreamnt  +downstreamnt
atggaggaggtggagaacacgagcaagcggaaggcgccggagagcgagcacgccgccgcc
gtctcgggggagcatccgccgcctccgccgccgcctgacgcggcggcgaagcggcggaac
ctgtcgcggtcgtgcatccacgaggtggcggtgcccaagggctacgccgcggccaaggac
gaggcggtgcacgggacgctctcgagcccggccttccatggcgagatggccaaggcctac
ccgttccagctcgaccccttccagagcgtctccatcgcctgcctcgagcgcaacgagtcg
gtgctcgtctccgcccacacctcggcggggaagaccgccattgccgagtacgccatcgcc
atgtcgttccgggacaagcagagggtcatatacacctcccctctcaaggccctgagcaac
cagaagtacagggagctcagccaggagttctccgatgtcggattgatgaccggcgatgtc
acgctgcagccgaacgcgacttgcctcgtcatgaccacggagatcctcagggcaatgctc
tacagggggtccgaggtgatcaaggaggttgcctgggttatctttgatgagatccactac
atgaaggatcgcgagcgcggggtcgtgtgggaggagagtataatcttcctgccacctgcc
atcaagatggtgttcctctctgccaccatgtcgaacgcgaccgagtttgccgagtggata
tgcaatctgcacaagcaaccttgtcatgtggtgtatactgacttcaggccgacaccgtta
cagcactatgtgttcccgattggcggctccggtctctaccttgtagtagatgaggatggc
caattcagagaggataattttttgaagctgcaagacacgttcacaaagcaaagtaatcaa
gtggatggaaggaagggtggtggacctaaagccagtggtcgaatagcaaagggcggaagt
gcctctggaaattcggacatatacagaatcgtcaagatgattatggaacggaagtttcaa
ccggtcataattttcagctttagcagaagagaatgtgaacaccatgccatgtcaatgtca
aaacttgacttcaacactgatgaagaaaaagataacatcgaacaggttttcagcagtgct
attctatgtttaagtgaggaagatagaggtttgcctgctatagagttgatgttgcctctt
cttaaacgaggtattgcagttcaccattctggattgcttccattaattaaagagctggtg
gagttgctcttccaagaaggccttgtaaaagctctctttgctactgaaacatttgccatg
ggactgaatatgcctgcaaaaaccgttgtgttcacgtctgtcaaaaaatgggatggtgat
actaaccgctatattgcttctggagaatatatacagatgagtggaagagctggtcggcgt
ggcaaggatatacgtggaatttgtgttataatgatagatgaaaaaatggagatgagtgtt
ataaaggacatggtgttaggtaaaccagcacctcttgtcagtactttccggctgagctat
tacacaattctcaatttaatgagtcgcgtggagggccagtttactgctgagcatgtgatc
aggaattcattccatcagtttcaatatgagaaggcattgccagaagtggtgcaaaagatt
acatcattggaaaatgaagctaccttacttgattcttctggagagactgatcttgcagaa
tatcataaattggggcttgatatatcggaacttgaaaagaaaatcatgtcggagatgatt
agaccagagagggctttgttatacttggttcctggaaggctggttaaagtgagagatggt
tcaacagactggggatggggtgtggttgtaaatgtggttaagaaacctccacaatctggt
actctccctcctgcactaagtgcatctcgtggtaataactatatagtggataccctgctt
cactgttcttctagttcgaacgagaatggatcccgttcaaagccattgccaccacgccca
ggggagaagggagaaatgcatgtggtgcctgtaccactacctttattatctggtctaagc
agtgttagaatcaacattcctcctgatctacgaccacctgaagcaagacaaaatatactt
tttgcagtgcaagagctgggaaagcggtacccccaaggtcttccaaagctagatccaatc
aaagacatgggtcttcaagaacctgaactagtggagttggttcataagcttgatgatctt
gagcagaaactgtgttctcatccacttcataagtctgatcaaagtgagcagcaactgtca
tggtatcaaagaaaagctgagctaaatcatgaaattcaaatgctaaagtcaaagatgcgg
gattcgcagctacaaaaatttagagatgagcttaggaatcggtcccgtgttctgaagatg
cttggtcacattgatgctgatggtgtgctccagctgaaaggacgtgctgcctgtttaata
gacacaggggatgagctgcttatcactgaacttatgtttaatggtacatttaacgatctt
gatcatcatcaagttgcttcccttgctagctgctttataccttgtgagaagtctagtgaa
caaatacgcctgagaagtgagctttctacaccaatgatgcagctacaggaggctgcgaga
aaaatagctgaggtacaaaaagaatgcaaattagaggtaaatgttgaagaatatgtcgaa
tcaacttgtaggccctacctgatggatgtcatatactgttggtcaaagggggccactttt
ggagaggtgatagaaatgactgacatttttgaaggaagtatcatacggctggctagaaga
ctggatgaatttctgaatcagttgaaagctgctgctcaagctgttggtgaggttaacctt
gagaacaagttcggagcggccagcgacagcttacgtcggggtatcatgttcgccaactca
ttgtatctgtga

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Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (23)   
   KEGG ORTHOLOGY (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (9)   
   Pfam (9)   
All databases (50)   

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