KEGG   Oryza sativa japonica (Japanese rice) (RefSeq): 9270457
Entry
9270457           CDS       T01015                                 
Name
(RefSeq) DNA-directed RNA polymerase I subunit 2 isoform X1
  KO
K03002  DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]
Organism
osa  Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    9270457
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osa03021]
    9270457
Enzymes [BR:osa01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     9270457
Transcription machinery [BR:osa03021]
 Eukaryotic type
  RNA polymerase I system
   RNA polymerase I
    Core subunits
     9270457
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpa2_4 RNA_pol_Rpb2_2 DUF3134
Other DBs
NCBI-GeneID: 9270457
NCBI-ProteinID: XP_015614312
Position
10:complement(18857788..18869422)
AA seq 1174 aa
MAAGKSSSASKEDQYAALRELYRPHIDSFDYFIDEGLDKMLQSIRPVEITVPNSPTTLRI
SLEKGHLFPPKRDGRLDAPLYPQQCRQARTTYHGEFKVDTFIQCNDGPAVRQTFNFGYLP
IMLMSKLCHLRGADSEKLIFHGEEATEMGGYFICGGMERLVRILILQKRNYPMGLIRGSF
VNRGAGYTDKAVIIRCVQDDQSSVTIKLYYLLNGSARLGFWLGGREFLLPVGIVLKALID
TSDREIFTSLTCCYSDHYERGKGVVSTQLIGERAQIILDEVRDLSLFTRTECLLHLGKYF
RSVMEGFEKDDFETVAEAVLKDYIFVHLQNNHDKFNLLIFMLQKLYAIVDQTASPDKADA
LQYQEVLLPGHLITVFLKDRLQDWLRKSKRLIVEEATKNKSFDLNDSQEVRKFLSKTSAY
VGKAIQSMIKVGKVNSQSGLDLPQRDGMTIHAERLNFHRYISHFRSVHRGSSFAKMRTTS
VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRISSFYNSEGATKDFQKIKMSLIARLV
GAGMAQLLPRIERTGPPEVLHVHVDGCIVGSIASAKIEEVVNHLRSLKLLPHSGIPEDLE
VGYVPLSHGGAYPGLYLFTNPARFLRPVRSLLGLSNGGPNIELIGPFEQAFMEIRCPDGG
DGGRNKLFPATHEEIHPTAILSVVANLTPWSDHNQSPRNMYQCQMAKQTMGFCGQALKFR
TDVKAFHLQTPQTPIVRTATYSKYCMDEFPSGTNAIVAVLSYTGYDMEDAMILNKSAVDR
GMFRGHIFQTECIDLSAKSRDNVTEFFCKSNLSRDTTAAIESDGLPRIGENIFPNEQYYS
VCNNLTGTVRPIKLKGSEPAAIDYVAVNGTNFKDRLQKANIRLRRVRNPIIGDKFSSRHG
QKGVCSQLWPDIDMPFSANTGMRPDLIINPHAFPSRMTIAMLLESIAAKAGSLKGKFIDA
TPFASSVKERSNSIVDELGPMLASYGFNYHGTEILYSGVFGTEMKCEIFLGPVYYQRLRH
MVSDKFQVRTTGRIDQITRQPIGGRKYGGGIRFGEMERDALLAHGASYLLHDRLHSCSDY
HIADVCSICGSLLTATVIKSESQKKAKRDMLGLPTVKPPKNFACQACKTSKGMETVAMPY
VFRYLASELAAMNIKLELRLSNRTEHPTTTSEES
NT seq 3525 nt   +upstreamnt  +downstreamnt
atggcggccgggaagagctcgtcggcctccaaggaggaccagtacgcggcgctgcgggag
ctgtaccggccgcacatcgactcgttcgactacttcatcgacgaggggctcgacaagatg
cttcagtccatccgccccgtggagatcaccgtccccaactcccccaccaccctcagaata
tccttggagaaaggtcatctgttcccaccaaagagggatggtcggttggatgcaccgctc
tacccccagcagtgcaggcaggcacggacgacgtatcatggggaatttaaagtggatact
ttcatccaatgtaatgacggaccagctgtcaggcaaaccttcaattttggttacttgcct
attatgttaatgtcaaagctttgccatctaagaggtgcagattctgaaaaattgattttc
catggtgaagaggcaacagaaatgggcgggtacttcatatgtggtgggatggagagactt
gtacggattcttattttacaaaaacgtaactatcctatgggcctgatccgtggctctttc
gttaatcgtggtgctgggtacactgacaaagcagtgatcataagatgtgtccaagatgat
cagtccagtgtgacaataaagctgtattacctcctaaatggcagtgcaaggcttgggttc
tggttgggaggcagagaatttctccttcctgttgggattgttctcaaggccctaattgat
actagtgaccgggaaatatttacaagcttgacatgctgctacagtgatcattatgaaaga
ggaaagggagttgtcagcactcaacttattggtgaaagggcacaaataattcttgacgaa
gtcagagacctgtctctttttactcgcacagaatgcttgttgcatcttggaaagtacttc
cgatctgtgatggaaggatttgagaaagatgattttgaaactgttgctgaggcagttctt
aaggactatatttttgttcacctgcaaaacaaccatgacaaatttaatttattgatattt
atgctgcagaaactttatgcgattgtagatcaaactgcgtcacctgataaagctgatgct
ctacagtaccaggaagttctcttgcctggccacctgataacagtttttctaaaggataga
cttcaagattggttgagaaagtccaaacggttaattgttgaagaggctacaaaaaataaa
agctttgatctcaatgactcacaggaggtcaggaaatttctcagtaaaacttcagcatat
gttggcaaagctattcagagtatgataaaggtcggaaaagtaaattcacaatcagggcta
gatctgccacagcgagatgggatgaccattcatgctgaacggctcaactttcatcgttat
atttcgcatttccggtctgtgcataggggttctagttttgctaaaatgcgtacgacatct
gtgaggaagttgcttccagagtcatggggtttcctctgtcctgttcatacacctgatgga
gagccttgtggtttactgaaccatatgacttccacatgccgtatttcatccttttacaac
tcagaaggggcaactaaagattttcagaaaataaagatgtcacttattgctcgtttggtt
ggcgctggaatggcccaactgttgccgaggatagagcgaactggtcctccagaagtccta
catgtccatgtggatggatgcattgttggttccatcgcttctgctaagattgaagaagta
gtaaatcatcttagaagtttaaaattgcttccacattcagggattccagaggatttggaa
gtgggttatgtacccttaagccatggtggggcttatcctggactataccttttcaccaat
ccagctagatttcttcgtccggtcagaagtctcttaggtctatccaatggagggccaaat
attgagctgattggaccatttgaacaggcattcatggaaatacgatgccctgatggtggg
gatggtggaagaaacaaattatttcctgcaactcatgaagaaatccaccctacagccatt
cttagtgtagttgcaaatttgacaccttggtctgatcacaatcaaagtcctcggaacatg
taccaatgtcagatggcaaagcaaaccatgggattctgtggccaagctctaaaattccgt
actgatgtaaaagcatttcatctacagacccctcagacaccaattgtccggacagctaca
tatagcaagtattgcatggatgagttcccatccggaacaaatgctattgttgcggtgcta
tcatacacagggtatgatatggaggatgccatgattttgaataaatccgctgttgatcgt
gggatgttccgtgggcatattttccagactgagtgcattgatttatcagcaaaaagtaga
gataatgttacggagttcttttgcaagagtaatctttcgagggacactaccgctgcaatc
gaatcagatggccttcctcggattggagagaacatatttccaaatgagcagtactacagc
gtctgtaacaatctcactggtacagtaaggcctatcaaactgaagggctcagaacctgca
gctattgattatgttgctgtcaatgggacaaattttaaggatcgtctacaaaaggctaat
attcgtctgcgtcgcgtgagaaatcctataattggtgacaagttcagcagcagacatggt
caaaagggagtttgttcgcagttgtggcctgatattgatatgccattctctgctaatact
gggatgaggccagatctcatcattaatccccatgcatttccttcacgaatgactatagca
atgctcttagagtcgatagcagcaaaggccggaagtctgaaagggaagttcattgatgca
acgccttttgcaagctcagttaaagagagatcaaattccattgtggatgaactgggaccc
atgcttgcttcttatggatttaattaccatggaacagaaattctatatagtggagttttt
ggcactgagatgaaatgtgagattttccttggacctgtatactatcaacgccttcgtcat
atggtctcagacaaatttcaggttcgtaccacagggcgaatagatcagatcacaagacag
ccaataggaggaaggaaatacggtggagggattcggttcggtgagatggagcgagacgcg
cttctcgctcatggtgcctcttacctcctacatgacaggctccattcctgctccgactac
catatcgcggacgtgtgctccatctgcgggagcttgctgacggcgacggtgatcaaatcc
gaaagccagaagaaagccaagcgcgacatgctcgggctccccaccgtaaaacctcccaag
aactttgcctgccaggcctgcaaaacaagcaaagggatggagaccgtcgccatgccttac
gtcttcagatacctggcctccgagttggcggccatgaacataaagttggagcttcggctc
agcaatagaacagagcatcctactactaccagcgaagaatcctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (28)   
   KEGG ORTHOLOGY (1)   
   RefGene (23)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (7)   
   Pfam (7)   
All databases (47)   

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