KEGG   Oryza sativa japonica (Japanese rice) (RefSeq): 9272357
Entry
9272357           CDS       T01015                                 
Name
(RefSeq) putative E3 ubiquitin-protein ligase RING1a
  KO
K10695  E3 ubiquitin-protein ligase RNF1/2 [EC:2.3.2.27]
Organism
osa  Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    9272357
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:osa04121]
    9272357
   03036 Chromosome and associated proteins [BR:osa03036]
    9272357
Enzymes [BR:osa01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     9272357
Ubiquitin system [BR:osa04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    9272357
Chromosome and associated proteins [BR:osa03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Canonical PRC1 (PRC1.2/1.4)
     9272357
    Noncanonical PRC1 (PRC1.1)
     9272357
    Noncanonical PRC1 (PRC1.3/1.5)
     9272357
    Noncanonical PRC1 (PRC1.6)
     9272357
SSDB
Motif
Pfam: zf-C3HC4_2 zf-C3HC4 zf-RING_2 zf-RING_UBOX zf-RING_5 zf-C3HC4_3 zf-C3HC4_4 zf-RING_4 zf-rbx1 zf-RING_6 zf-Nse TRAF3_RING zf-UDP zf-RING_11 zf-RING_10 zf-C3HC4_5 ZNF512_C2H2
Other DBs
NCBI-GeneID: 9272357
NCBI-ProteinID: XP_015640607
UniProt: A0A0P0WPB2
Position
5:24473060..24478851
AA seq 488 aa
MPAQKRPAPEAASAPAGGDGHVEGGGAGGGGGADEDAHRGGERSPKVMNGGGPEKEKERR
DADSDAEEEEEEAGGGGGGGGADEDRDSPSSESDGDMDEFILVKLMDIRKEVQCPICLGI
IRKTRTVMECLHRFCRDCIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALILALYPDI
DKYEEEELAFSEEERTRNKKIQASIAETFRRQSEALVKKRSVAKATGSTITRRTRGNMRA
KRRGRTSSPDIVATDNEDEDRDENGNEGSKESSSVDDRSPDVRQKRVRRWPVPRSSPAKS
IGGIDSSFEDIDDLGSGRDIMSTSPLRGEMLAWGKNGTRSQTRHGNSGGSSGRMAKGGRV
TKLVEYLRNTDEFDNKFNLYLVLLPLNGQSMPKLEKPYLSCQPTFSVRHLCQFVALQLSR
HAKEVEIFIRKNPNNGCFASIDTSADEIKLNHDALERLEEEKSLSELYPSLASGHGDLEL
LYSLKAEV
NT seq 1467 nt   +upstreamnt  +downstreamnt
atgcccgcgcagaagcggccggcaccggaggcggcgtcggctccagcggggggagacggg
cacgtggaaggaggaggtgctggtggtggtggtggcgcggacgaggacgcccaccgcggc
ggggagcgctccccgaaggtgatgaacggtggcgggccggagaaggagaaggagcggcgg
gacgctgattctgatgcggaggaagaggaggaggaggccggcggcggcggtggtggtgga
ggggccgacgaagaccgcgacagcccgtcttcggagagcgacggcgacatggacgagttt
atactagtgaaattaatggatatacggaaagaagtgcagtgccctatatgcttaggcatt
atccggaagacaaggacagttatggagtgtttgcaccggttttgtagggattgcatagat
aaatccatgcgactaggaaataatgaatgcccagcatgccgcacccattgtgcaagtaga
cgttctttgagggatgatcctaattatgatgctttaattttggctttgtatccagatatt
gacaagtacgaggaagaggaacttgctttcagcgaagaggagaggactcgcaacaaaaag
atccaagcatccatcgctgaaacatttcgaagacaatcagaagcactcgtgaagaagcgt
tccgttgcaaaagcaacaggttcaactattacgagaaggaccaggggtaatatgcgcgca
aaaaggaggggacgaactagttcccctgatattgttgcaactgacaatgaggatgaggat
agagatgaaaatggcaatgagggcagcaaagagtcgtcttctgttgatgaccgttcccca
gatgtaaggcagaaaagagttcggaggtggcccgtgccacgatcatcccctgctaagagc
attgggggtattgatagtagctttgaggatattgatgacttaggaagtggcagagatatc
atgagtacttctccactacgcggagagatgcttgcctggggaaaaaatggcacccgcagt
caaacccggcatggcaattctggtggttccagtggaaggatggcaaagggtggtcgtgtt
accaagttggttgaatacctacgtaataccgatgaattcgataataagttcaacttatat
cttgttctacttccacttaatggacaaagcatgcctaaattggagaagccctatctcagt
tgccaaccgacattctctgttcgccatctttgccagtttgttgctctccaattgtctcgc
catgcgaaagaagtggagatattcatcaggaagaaccccaacaatggatgctttgcatcc
atagatactagtgcagatgagataaaactgaatcatgacgccttagaaagattggaggaa
gagaaatctctttcagagctgtacccttcacttgcctctggccatggggatctggaatta
ttatattccctgaaagcagaagtgtag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (17)   
   Pfam (17)   
All databases (48)   

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