KEGG   Oceanicoccus sagamiensis: BST96_12475
Entry
BST96_12475       CDS       T04832                                 
Name
(GenBank) RNA polymerase factor sigma-54
  KO
K03092  RNA polymerase sigma-54 factor
Organism
osg  Oceanicoccus sagamiensis
Pathway
osg02020  Two-component system
osg02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:osg00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    BST96_12475
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    BST96_12475
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osg03021]
    BST96_12475
Transcription machinery [BR:osg03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     BST96_12475
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID
Other DBs
NCBI-ProteinID: ARN74859
UniProt: A0A1X9NH72
Position
complement(2717788..2719302)
AA seq 504 aa
MKQSLQLKIGQQLTMTPQLQQAIKLLQLSTLDLQQEIQQALESNPMLDVNEEQDTERKSD
SDQEQVKTEEVDFSDNTEKKTETAEVEGPAADSDWQDNIPEDLPVDTQWDDVYQSSAPAA
TPSSSQASSSEDFDFDSRNSITESLQDHLLWQLNLTRMSDVDRSIGMAIIDAVDANGRLT
QSPEQLHTSFNKDNPDIELDEIVAVLHGIQQFDPPGVAAMDLQECLMIQLNQLSADTPWL
KEAKNVIDRHLSLLGNRDYAQLMRRSKLKEPDLREVLSLIQSLNPNPGEMISPDTTEYIV
PDVYVKKIKGRWTVELNPDISPKLRINSDYASLVKRADNSDDNTFLRDNLQEARWFLKSL
QSRNETLMKVATKIVEHQRGFLEYGEEAMKPLVLHDIAEAVEMHESTISRVTTQKYMHTP
RGIFELKYFFSSHVSTDSGGECSSTAIRALIKKLIAAENPKKPLSDSKITVELGDQGIKV
ARRTIAKYRESLMIPPSNERKRLV
NT seq 1515 nt   +upstreamnt  +downstreamnt
atgaaacaatcgctacagcttaaaatcggtcaacaactgacgatgacgcctcagctacaa
caggcgattaaattactgcaactctctacgctcgacctgcaacaagagatccagcaagca
ctggaaagtaacccaatgcttgacgtcaatgaagaacaagataccgaacgaaaaagcgat
agtgaccaggaacaggtcaaaaccgaagaagtcgattttagcgacaataccgagaagaag
actgaaactgccgaagtggaagggcctgccgctgatagcgattggcaggacaatattcca
gaagacctgccagtcgatacccagtgggacgacgtttaccaatccagcgcaccggccgcc
acccccagctcatcccaggcttcatccagcgaagactttgattttgattcccgcaacagt
attaccgagtccctgcaagatcatctgttatggcagcttaacctgacccgtatgtccgat
gtggaccgcagtattggcatggccattatcgatgccgtagacgccaatggccgcctgacc
caatcgccagaacaactgcataccagctttaacaaagataaccccgatatcgagcttgat
gagatcgtcgcggtactgcacggcattcagcagtttgaccctccgggtgttgctgccatg
gatttgcaagagtgcctgatgattcaactgaatcagctatccgctgataccccctggctc
aaagaagccaagaacgtgattgaccgccacctatcgctgctgggtaaccgtgattacgcc
cagctgatgcgccgcagcaagctaaaagagccagacctgcgggaagtgcttagcctgatt
caaagcctgaaccctaatccaggggagatgatttctccagacaccacggaatacatcgtc
ccggatgtctatgtgaaaaagatcaaaggccgctggacggtggagcttaaccccgatatc
tcccccaaattacgtattaacagcgactacgcctcgctggtcaaacgcgccgacaatagc
gatgacaacacctttttgcgggacaacctgcaagaagcccgctggtttttgaaaagcctg
caaagccgtaatgaaacgctgatgaaagtagccaccaaaatcgtagaacaccaacgcggc
tttttggagtacggcgaagaggccatgaaacccctggttttacacgatattgccgaagcg
gttgaaatgcatgagtccaccatatcccgagtaaccacacagaagtatatgcataccccc
aggggtatctttgagctgaagtacttcttctccagccatgtgagcacagactccggtggc
gagtgctcatccaccgctatccgcgccctgatcaagaaactgattgccgcagaaaacccc
aaaaagcccttaagcgatagcaaaattactgtcgagctgggtgatcaggggattaaggtc
gccagacgcaccatcgccaagtaccgcgagtcgctgatgattcccccatcgaatgagcga
aaacggctagtctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (121)   
   KEGG ORTHOLOGY (1)   
   RefGene (118)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (130)   

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