KEGG   Ottowia oryzae: C6570_05295
Entry
C6570_05295       CDS       T05363                                 
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
  KO
K03092  RNA polymerase sigma-54 factor
Organism
otk  Ottowia oryzae
Pathway
otk02020  Two-component system
otk02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:otk00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    C6570_05295 (rpoN)
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    C6570_05295 (rpoN)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:otk03021]
    C6570_05295 (rpoN)
Transcription machinery [BR:otk03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     C6570_05295 (rpoN)
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID HTH_3 HTH_38 Phage_CII HTH_31 DUF2344 HTH_Crp_2
Other DBs
NCBI-ProteinID: AVO33740
UniProt: A0A2S0MD39
Position
complement(1129656..1131236)
AA seq 526 aa
MKPGLSLRVSQHLALTPQLQQSIRLLQLSTLELSSEVEQMLDDNPFLEREEDGAPREEFG
LSRADTRTSEGDRVSENATEFEAASADGAGAEGPLDSESLLHEGWDGDGSVDVSADDGEW
GGDAPARGQQAAGDDELDAGERTGAQESLTAHLHQQALALRLSPEDSAALRFLIESLNED
GYLEDSLAQLAATLIDDDDDIEQMEELVHRFTMALKLLQSLEPAGVGTRNLAECLSLQLR
DLRAACAGEPDELARVGAAEAICAQHGAIELLAKRDAKRLAALTGLPEAQVRQGMQLIAT
LEPKPGRRFADVERNVVVPDVIVSVRGSGAQQRFRVQLNPDVMPRLRVHDVYASALRGGK
GGENHQALAQRLQEARWFIKNIQQRFDTILRVSQAIVERQKSFFIHGELAMRPMVQRDLA
DELGVHESTISRVTTAKYMATPRGTFELKYFFGSALATESGGNASSTAVRALIKQLIDAE
NTAKPLSDNQLAELLKAQGIDCARRTVAKYREGLRIPVAGLRKASA
NT seq 1581 nt   +upstreamnt  +downstreamnt
gtgaagcccggtctgtcgctgcgggtttcgcagcaccttgcgctcacccctcagctgcag
cagtcgatccggctgctgcagttgtccacactggagctgtccagcgaggtggagcagatg
ctggacgacaacccttttctggagcgcgaggaagacggcgccccgcgcgaggaattcggc
ctgtcgcgtgccgacacgcgcaccagcgagggcgaccgggtcagcgagaatgctacagaa
tttgaagctgccagcgctgatggcgcgggcgctgaaggcccgttggactctgaatcccta
ctgcacgaaggctgggacggcgatggcagcgtggacgtcagcgccgacgacggcgaatgg
ggtggcgacgccccggcgcggggacagcaggctgcgggcgacgacgagctggacgccggc
gaacgcacgggcgcccaggaaagcctgaccgcacacctgcatcagcaggcgctggccctt
cgcctgtcgcccgaggattcggccgcgctgcgctttctgatcgagtcgctgaacgaagac
ggctacctggaagattcccttgcgcagctggccgccacgctgatcgacgacgacgacgat
atcgagcagatggaagagctggtgcaccgcttcaccatggcgctaaaactgctgcagtcg
ctggagccggccggcgtgggcacccgcaacctggccgaatgcctgtcgctgcagctgcgc
gatctgcgcgcagcctgcgcgggcgagcccgacgagctggcccgcgtcggggcggccgag
gccatttgcgcccagcacggggcaatcgagctgctggccaagcgcgacgccaagcgcctg
gccgcgctgacgggcctgcccgaagcgcaggtgcgccagggcatgcagctgatcgccacg
ctggagcccaagccggggcgccgctttgccgacgtggagcgcaacgtggtggtgcccgac
gtgatcgtcagcgtgcgcggcagcggtgcgcagcagcgctttcgcgtgcagctgaaccca
gatgtgatgccgcgcctgcgcgtgcacgacgtgtacgccagcgcactgcgcggcggcaaa
ggcggcgaaaaccaccaggcgctggcgcagcggctgcaagaggcccgctggttcatcaag
aacatccagcagcgctttgacaccatcctgcgcgtgtcgcaagccatcgtcgaacggcaa
aagagcttcttcatccacggtgagctggccatgcggcccatggtgcaacgcgacctggcc
gacgagctgggcgtgcacgaatccaccatctcgcgcgtgaccaccgccaagtacatggcc
acgccgcgcggcacgttcgagctgaagtatttcttcggctcggcgctggccaccgaatcg
ggcggcaacgcgtccagcaccgccgtgcgggcgctgatcaagcaactgatcgatgccgag
aacacggccaagccgctgtccgacaaccagctggccgagctgctgaaagcccagggcatc
gactgcgcgcgccgcacggtagccaagtaccgcgagggcttgcgcatacccgtggccggg
ctgcgcaaggcttctgcctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (18)   

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