KEGG   Ottowia oryzae: C6570_09140
Entry
C6570_09140       CDS       T05363                                 
Name
(GenBank) DNA helicase II
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
otk  Ottowia oryzae
Pathway
otk03420  Nucleotide excision repair
otk03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:otk00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    C6570_09140
   03430 Mismatch repair
    C6570_09140
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:otk03400]
    C6570_09140
Enzymes [BR:otk01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     C6570_09140
DNA repair and recombination proteins [BR:otk03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     C6570_09140
   MMR (mismatch excision repair)
    Other MMR factors
     C6570_09140
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 PcrA_UvrD_tudor AAA_12 Viral_helicase1 AAA_30 AAA_22
Other DBs
NCBI-ProteinID: AVO34371
UniProt: A0A2S0MF28
Position
1964937..1967336
AA seq 799 aa
MPFVEDARDARAAAMPILAGLNPEQLAAVTLPPEHALILAGAGSGKTRVLTTRIAWLLQT
GQISPGGILAVTFTNKAAKEMLTRLTAMLPLNARGMWIGTFHGLCNRLLRAHYKLANLPQ
AFQILDTQDQLSAIKRLYKQHNVDDERFPAKQMQWFIAGCKEDGERPGDVAVHDADSRRK
VEIYQLYEEQCQREGVVDFGELMLRSYELLRDNDAVRDHYRRRFRHVLIDEFQDTNRLQY
AWVKMIVGLPGEGGGAVMAVGDDDQSIYAFRGARVGNMADFVREFHVQHQIKLEQNYRSH
SNILDSANALIAHNTKRLGKSLRTDQGAGEPVRVYEAPSDFAEAEWVVDEMRQLVKGEGM
ARKEIAVLYRSNAQSRVLETQLFNAGVPYRVYGGLRFFERAEVKHALAYLRLLENPRDDT
SFLRVVNFPPRGIGARSIEQLQDAARAAGTALADAVASVPGKAGANLAAFVARIDVLREQ
TEGQTLREIIERMLDDSGLLEHYRAERDGADRVENLQELVNAAESFVTQEGFGRDAVALP
VDETAALTQSPASQGLDPNAPLLNEPIAAPPGVVDEDTGETLSPLAAFLTHAALEAGDNQ
AQAGQDAVQLMTVHASKGLEFDAVFITGLEEGLFPHENSLSDFEGLEEERRLMYVAITRA
RQRLYLCHAQTRLLHGQTRYNVRSRFLEELPEGALKWLTPRQGGFASIAAAQSGGHRARP
AWGNSAIYPDMVASAPLPPRKAEPEHGIRTGAKVFHNKFGEGQVMAVEGSGDDARAQVNF
PRHGLKWLALAVAKLTVVE
NT seq 2400 nt   +upstreamnt  +downstreamnt
atgccttttgtggaagacgcgcgcgatgcgcgggccgcggcgatgccgatcctggccgga
ctgaaccctgaacaactcgcggcggtgaccttgccgcccgaacacgccttgatcctggct
ggcgctggctctggcaagacgcgggtgctgaccacgcgcatcgcctggctgctgcagacc
gggcagatctcgcccggcggcatcttggcggtcaccttcaccaacaaggccgccaaggag
atgctcacgcgcctgacggccatgctgccgctgaatgcgcgcggcatgtggatcggtacc
ttccacggcctgtgcaaccgcctgctgcgcgcgcactacaagctggccaacctgccgcag
gctttccagatcctggatacgcaagaccagctgtcggccatcaagcggctgtacaagcag
cacaacgtggacgacgagcgctttccggccaagcagatgcagtggttcatcgccggctgc
aaggaagacggcgaacgcccgggcgacgtggccgtgcacgacgccgattcacgccgcaag
gtcgagatttaccagctctatgaagagcagtgccagcgcgaaggcgtggtggattttggc
gagctgatgctgcgcagctacgagctgctgcgcgacaacgacgccgtgcgcgatcactac
cgcaggcgctttcggcacgtgctgatcgacgaatttcaggacaccaatcgcctgcagtac
gcctgggtcaagatgatcgtgggcctgccgggcgaaggcggcggcgcggtgatggcggtg
ggcgacgacgaccagagcatctacgcctttcgcggcgcgcgcgtgggcaacatggccgat
ttcgtgcgcgaattccacgtgcagcaccagatcaagctggagcagaactaccgcagccac
agcaacatcctcgattcggccaacgcgctgatcgcgcacaacaccaagcggctgggcaaa
agcctgcgcaccgaccagggcgcgggcgagccggtgcgcgtgtacgaggcgcccagcgac
tttgccgaggccgaatgggtggtggacgagatgcgccagctggtcaagggcgaaggcatg
gcgcgcaaggaaatcgccgtgctgtaccgcagcaacgcgcaaagccgggtgctggaaacg
cagctgttcaacgccggtgtgccgtaccgcgtgtatggcggcctgcgctttttcgagcgg
gctgaagtcaagcacgcgctggcctacctgcgcctgctggagaacccgcgcgacgacacc
agttttctgcgcgtggtgaactttccgccgcgcggcattggcgcgcgcagcatcgagcag
ttacaggacgccgcccgcgccgcaggcacggccctggccgacgcggtggccagcgtgccc
ggcaaggcgggggccaatctggccgccttcgtcgccaggatcgacgtgctgcgcgagcag
accgagggccagaccctgcgcgagatcatcgaacgcatgctggacgacagtggcctgctg
gagcactaccgggccgagcgtgatggcgccgaccgggtggaaaacctgcaggaactggtc
aacgccgcggaaagcttcgtcacccaggaaggctttggccgcgacgccgtcgccttgccc
gtggacgagaccgccgcgctgacccaaagcccggccagccaggggctggacccgaatgcg
cccttgctgaacgagcccatcgccgccccaccgggggtggtggacgaagacaccggcgag
acgctgagcccgctggccgccttcctgacccacgccgcgctggaggcgggcgacaaccag
gcgcaggccggccaggacgccgtgcagctgatgactgtgcacgccagcaaggggctggaa
ttcgatgcggtgttcatcaccgggctggaagaggggcttttcccgcacgaaaactcgttg
tccgacttcgagggcctggaggaagagcgccgcctgatgtacgtggccatcacccgcgcg
cgccagcgcctgtacctgtgccacgcccagacccgcctgctgcacgggcagacgcgctac
aacgtgcgcagccgcttcttggaagagctgcccgagggcgcgctgaagtggctgaccccg
cgccagggtggcttcgcgtccatcgcggcggcgcagtcgggcggccaccgtgcccggccc
gcttggggtaacagcgccatctaccctgacatggtggccagcgcaccgctgccgccccgc
aaggccgagccggaacacggcattcgcacaggcgccaaggtgttccacaacaagtttggc
gaggggcaggtgatggcggtggagggcagcggcgacgacgcgcgtgcgcaggtcaacttc
ccccgacacgggctcaagtggctggcgctggccgtggccaagctgacggtcgtcgagtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (20)   

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