KEGG   Orientia tsutsugamushi Ikeda: OTT_1740
Entry
OTT_1740          CDS       T00705                                 
Symbol
dnaX
Name
(GenBank) DNA polymerase III gamma and tau chains
  KO
K02343  DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
Organism
ott  Orientia tsutsugamushi Ikeda
Pathway
ott03030  DNA replication
ott03430  Mismatch repair
ott03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ott00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    OTT_1740 (dnaX)
   03430 Mismatch repair
    OTT_1740 (dnaX)
   03440 Homologous recombination
    OTT_1740 (dnaX)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ott03032]
    OTT_1740 (dnaX)
   03400 DNA repair and recombination proteins [BR:ott03400]
    OTT_1740 (dnaX)
Enzymes [BR:ott01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     OTT_1740 (dnaX)
DNA replication proteins [BR:ott03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     OTT_1740 (dnaX)
DNA repair and recombination proteins [BR:ott03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     OTT_1740 (dnaX)
SSDB
Motif
Pfam: DNA_pol3_gamma3 DNA_pol3_delta2 AAA AAA_5 AAA_22 AAA_14 AAA_19 RuvB_N DNA_pol3_delta AAA_assoc_2 AAA_30 Bac_DnaA DEAD TIP49 AAA_16 PIF1 AAA_18 TsaE ResIII
Other DBs
NCBI-ProteinID: BAG41198
UniProt: B3CV01
Position
complement(1759985..1761664)
AA seq 559 aa
MLERQSGYVVWARKYRPKTMCELIGQEVLTKVLTYSMITGCLSQAYLLSGIRGVGKTTAA
RIIATTINCLQPLVTSKTIFACTKCNSCIAIENNSHPDINEIDAASRTGVDDVRTIIDDS
EYKPLISKYKIFIIDEVHMLSKNAFNALLKLLEEPPSHTIFIFATTEINKIPLTVISRCQ
KFDLRRLDVNNIVQILSNIIAKENVSATKEILEFIAVKADGSARDAISLLEQAKALAQNI
ADTASSEAVVISLNTVEQMCGVLDLGKSTDLLSAIAEKNAEKGINIVTDLYISGTDFVVC
SQNILDLIGYLIKVKTIDGYTESIYASHNNRLNSLSMKLSLSRLTVLWQIFSKSIQELKI
SHNPRLCFEVVVIKAIYSFSLPTPIDALRQLKSELTDAKTNVDNAANSPAVAESLPASMD
KYELQSYECYSDINNKKMLTKSNNSNNYLTILVDFLKYLNQIGEVDLYYYLMNIVSVIDI
TGCSVFLGSKGSNAKMNSQLTMHLCQWKPNNWNVLTVENDTKLPLKAELIQMFKVSKAWD
LITTNFKDVEVVDIIMNKK
NT seq 1680 nt   +upstreamnt  +downstreamnt
atgctagaaaggcaaagtggctatgtagtttgggctagaaaatatagacctaaaactatg
tgtgagttgatagggcaggaagtattaactaaagttttaacttatagtatgattactggc
tgcttatcgcaagcttatttgttgagtggtattcgcggcgttggaaaaacaactgcagct
agaatcattgctacaacaattaattgtttgcagccattagtaacttcaaaaacaatattt
gcttgtactaagtgtaatagctgtatagctatcgaaaataatagccatcctgatattaat
gaaattgatgcagctagtagaactggagtagatgatgtcaggacaataattgatgatagt
gaatataagccattaatttctaaatataagatatttattattgatgaagttcatatgctc
tctaagaacgcatttaatgcattgttaaagcttcttgaagaacctccaagtcacactatt
tttatttttgcaacaaccgagattaataaaattcctttgacagtgatttctagatgtcaa
aaatttgacttaagacgattggatgtaaataatattgttcaaattttgagtaacattata
gctaaggaaaatgttagcgctactaaagaaatattagaatttattgctgttaaggcagat
ggatccgcaagggatgcaatatcattacttgagcaggctaaagcattagcccaaaatatt
gcagatactgcaagttctgaggcagtagtgattagtttaaatactgtcgaacagatgtgc
ggggtattagatttaggaaaatcaacagatcttctatcagcaattgctgagaaaaatgca
gaaaaaggcattaatattgttacagatttatatataagtggaactgattttgtagtatgc
agtcaaaatatactagatctgattgggtatttaattaaagtgaaaacgatagatggctat
actgaatctatttatgcgagtcataataatagattaaattctcttagtatgaaattatct
ttatcgcgattgactgtgctatggcaaatatttagtaaatctatacaagagttaaagatt
agtcataacccaaggctttgttttgaggttgttgttataaaagctatttacagtttttca
ttaccaactcctatagatgcattaaggcaattaaagagtgaattaactgatgctaaaact
aatgtcgataatgccgctaattcgcctgctgtagctgaatctttaccggccagcatggat
aaatatgagctacaatcttatgaatgctattctgatataaataataaaaaaatgttgact
aaatctaataatagtaataattatttgacgattttagtagattttttaaaatatcttaac
caaattggagaggttgatctttattattatctaatgaacatagtttcggttattgatatt
actggatgtagtgttttcttaggcagcaaaggtagtaatgcaaagatgaacagtcaattg
acaatgcatttatgtcaatggaagcctaataattggaatgtcttaactgtagaaaatgat
acaaaattgccattaaaagcagagctcattcaaatgtttaaagtttctaaagcatgggat
ttaattacaactaattttaaagatgttgaggttgttgatattataatgaataaaaaatag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (19)   
   Pfam (19)   
All databases (32)   

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