KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112217730
Entry
112217730         CDS       T05605                                 
Symbol
si:dkey-119f1.1
Name
(RefSeq) structural maintenance of chromosomes protein 6-like isoform X1
  KO
K22804  structural maintenance of chromosomes protein 6
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:otw00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:otw03400]
    112217730 (si:dkey-119f1.1)
DNA repair and recombination proteins [BR:otw03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    SMC5-SMC6 complex
     112217730 (si:dkey-119f1.1)
SSDB
Motif
Pfam: SMC_N AAA_23 Cast AAA_13 Crescentin AAA_21 AAA_29
Other DBs
NCBI-GeneID: 112217730
NCBI-ProteinID: XP_024233989
Position
LG18:complement(23086324..23103973)
AA seq 1090 aa
MSKRKSNSIGESPHKRVRPTEVHDEDNEVGPSQPSVPLGSHTTVGEVGIVESISLKNFMC
HSLLGPFAFGSNVNFVVGNNGSGKSAVLTALMVGLGGKATTTNRGSSLKGFVKEGESSAD
VSITLRNKGRDAYKPEVFGQAIIVDLKITREGMRTYKLKSKAGHLVSAKKDELLAILDHF
NIQVDNPVSMLTQEMSKHFLHSKGEGDKYRFFMKATQLEQMKEDYTYIITTKNVTLDTVE
KHEECLEGLKRKYLEKEDRVKSLASLDDMHSKLEELKNQMAWALVSEMEKEVKPMREKLQ
SEERSTIKYDQKVDEWKAKVVEAEKKYKGIREQLEAITVRVQQLEPQSAELKNEAQSRSK
AFNTAQASVHRFKTNLRDLEKDKDQLSRRINELKLSISQTSGAETQVRVERMEKLQTDLD
TLNFQDSTLGQQMEQFQQAVSRAKDELEKMIREEEDLKRSMEAIRRKLQTMEGSRSDRLR
RFGEKMPALLAAIEDADRKGQFRKKPVGPLGYCIRLKDHEQALAVEKCLGSLMVAFTCDN
HEDEKLLQGLMRGYYQGGRRPQIITCQFFNRVHDTSRRAVNHPDYPSVLQSLEIEDPVVA
NCLIDQRGIETILLIKSPAEARRVMQGRQPPRNCYQAFTKEGDQCYNNRYYSNDQRRCDY
LSRDVEEEIRQLQEEMRNKEAHLDRFSQQKQRVEEDIRNNNSLLKRAYDDRKRAKDKFRR
LQQEISDLQNVEEPQSEDLKPLEEELEEINNKISAGRAESEEARRKMAQLKASWEEVEQR
YRQHKDSISTVAEEAEPIKEELSKSDQDVEKSKHHKKHYEDKRKVHINTIQALKASLDLK
EQELTASVVKATEICPERSEVRRTARSLDSEISRLKLKISTQQDQQGDREEVIRQYQEAL
VNYSNINQQVKCLKRFIQVLCKIMDDRHRVYTELRRFLSVRCKMYFDSMLSQRGYIGKMM
FEHKNETLSISVQPGVGDKAALSDMRSLSGGERSFSTVCFVLSLWAIAEAPFRALDEFDV
YMDMVNRRISMDMMLKIASSQRYRQFIFLTPQSMSSLPVNNLIRILRLKDPDRGQTALPF
GQRNEEEEEE
NT seq 3273 nt   +upstreamnt  +downstreamnt
atgtctaagaggaagagcaactcaattggagagagcccacacaagagagtcagacccaca
gaggttcatgatgaagataatgaagtgggtcccagccaaccctctgtgccactaggatcg
catacgactgttggagaggtgggtatagtggagagcatctccctgaagaattttatgtgc
cactctctgctggggccatttgcgtttgggtccaatgtcaactttgtcgtcggcaacaat
ggaagtggaaagagtgctgtcctcacagctcttatggtgggcctgggagggaaagctaca
accacaaacagagggtcctccctgaagggatttgtgaaagaaggagagagttcagctgac
gtctccataacactgcgtaacaagggcagggatgcctacaagccagaagtgttcggccag
gctatcatagtagacctcaagataacccgtgagggcatgaggacctacaagctcaagagc
aaagcaggtcatcttgtgtctgcgaagaaggatgaacttttggccattctggatcacttt
aacatccaggtggataaccctgtatctatgctaactcaagagatgagcaagcactttctg
cactccaaaggagaaggggataagtacagattctttatgaaagccacacagcttgagcag
atgaaagaggattacacctatatcataacgactaaaaatgtcactctagacactgtggag
aaacacgaggagtgtctggaggggttaaagaggaagtacctggagaaagaggaccgggtc
aaaagcctggcctcgctggacgacatgcacagtaaactggaggagctgaagaatcagatg
gcttgggctctggtgtctgagatggagaaagaggtgaagcccatgagagagaagctccaa
tcagaggagaggtccaccatcaaatacgaccagaaagtagacgagtggaaggccaaggtg
gtggaggcggagaagaagtacaagggtatccgggagcaactggaggccatcactgtgagg
gtgcagcagcttgagccacagagtgctgagctgaagaacgaggctcagagcagaagcaag
gccttcaacacagcccaggccagtgtacacagattcaagaccaacctgagagacctggag
aaggacaaggatcagctctccaggagaattaatgaactcaagttgagtatcagccagacg
tctggtgcggagacccaggtgcgtgttgagcgcatggagaagctgcagacagacctggac
actctgaacttccaggactctaccctaggtcagcagatggaacagttccagcaggctgtg
tcccgggccaaggacgagctggaaaagatgatacgagaggaggaggatctgaagaggtct
atggaggccatcaggaggaagttgcagaccatggagggcagccgctccgaccgcctgcgc
cgcttcggggagaagatgcccgcgctgctcgccgccatcgaggacgccgacaggaagggc
cagttcaggaagaaaccagtggggccgctggggtactgtatccgtctgaaggaccatgag
caggccctggccgtggagaaatgtcttggaagcctgatggtggccttcacctgtgacaac
cacgaggacgagaagttgctgcagggcctcatgagagggtactaccaggggggtaggaga
ccccagatcatcacctgccagttcttcaacagggtccatgacaccagtaggcgggctgtg
aaccaccctgactacccgtcagtcctacagtctctggagatcgaggacccagtggttgcc
aactgcctcatcgaccagaggggcatagagaccattctgctcatcaagagtcctgcagag
gcccgcagagtgatgcagggcaggcagccccctagaaactgctaccaggctttcaccaag
gagggagaccagtgctacaacaaccgctactactccaacgaccagaggaggtgtgactac
cttagcagagacgtagaggaggagatcaggcagttgcaggaagagatgcggaacaaggag
gcccacttggatcggttcagccagcagaagcagagggtggaggaggacatcaggaacaac
aacagtctcctgaagagggcctacgacgacaggaagagggccaaggataagttcaggagg
ctgcagcaggagatcagtgacctgcagaacgtggaggaaccccagtctgaggacctcaag
cctctggaggaggagctggaggagatcaacaataagatttcagcaggtcgtgcggagagc
gaggaggcccgtagaaagatggcccagctgaaggcttcctgggaggaggtggagcagagg
taccgccagcacaaagactccatcagcactgtggccgaggaggccgaacccatcaaggag
gagctgagtaagagcgaccaggatgtggagaagagcaagcaccataagaaacactacgag
gacaaacgcaaggtccacatcaacaccatacaggccctgaaggccagcctggatctcaag
gagcaggagctcacggcttctgtagtgaaggccacagagatctgtccagagcggtccgag
gtgcgccggacagccaggagtctggacagcgagatcagccgtctgaagctgaagatcagc
acccagcaggaccagcagggcgaccgcgaagaggtcatcaggcaataccaagaggccctt
gtgaactacagtaacattaaccagcaggtgaagtgcctcaagcgcttcatccaggtcctg
tgtaagatcatggacgatagacaccgagtctacacagagctgaggaggtttctctcagtg
cgttgcaagatgtactttgactccatgctgtcacagagaggctatatagggaagatgatg
ttcgagcacaagaacgaaaccctatccatctcggtccagccaggtgtgggggataaggct
gctctgagtgacatgcgctctctgtctggaggagagcgctcgttctccactgtctgtttc
gttctctctctctgggccatcgctgaggcccccttccgcgccctcgatgagtttgacgtc
tacatggacatggtgaaccgaaggatatccatggacatgatgttgaaaatcgcttctagc
caacgttaccgacagttcatattcctcaccccacagagcatgagctctctcccagtcaac
aacctgatccggatcctgcggctgaaagacccggaccgtggccagacggctcttcccttt
ggacagaggaatgaggaagaggaagaggagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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