KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112219441
Entry
112219441         CDS       T05605                                 
Name
(RefSeq) lysine-specific demethylase 2B isoform X2
  KO
K10276  F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27]
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:otw00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    112219441
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:otw03000]
    112219441
   04121 Ubiquitin system [BR:otw04121]
    112219441
   03036 Chromosome and associated proteins [BR:otw03036]
    112219441
Enzymes [BR:otw01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.27  [histone H3]-dimethyl-L-lysine36 demethylase
     112219441
Transcription factors [BR:otw03000]
 Eukaryotic type
  Zinc finger
   CXXC CpG-binding proteins
    112219441
Ubiquitin system [BR:otw04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   SCF complex
    Target recognizing subunit (F-box)
     112219441
Chromosome and associated proteins [BR:otw03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    112219441
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     112219441
SSDB
Motif
Pfam: PHD_4 zf-CXXC JHD F-box-like F-box JmjC Cupin_8 LRR_4
Other DBs
NCBI-GeneID: 112219441
NCBI-ProteinID: XP_024236446
Position
LG20:13442690..13494080
AA seq 1405 aa
MEASAESGRKLRSICRTMYDENEDFSDVEEIANVRGFNLEEKLVSDSYNTHFVQLMDGKD
FTYEYVQREALQTPLIFKAKDGLGIRMPDPEFTVSEIKGLVGSRRAVDVMDVSTQKGSEM
SMAQFVRYYETPEEERDKLFNVISLEFSHTKLENLIKRPTVVDLVDWVDNMWPLKLKRRQ
TEATNVISEMKYPKVQKYCLMSVKGCYTDFHIDFGGTSVWYHVFKGGKVFWLVPPTPHNL
ALYEDWVLSGKQSDIFLGDRADGCQRVELKQGYTFFIPSGWIHAVYTPEDTLVFGGNILH
SFNIPMQLSIYEIENRTKVHSKFRYPFYHEMCWYVLERYVHCLTKRSHLTPEFRREPLLI
DLETKLSTESPSSDSRSQDMDEEDSCETQQGRDEQGDRSAFDDPCSPDNRKGKSSGLRHL
KAALSNDSEDSCIPTSTQPPEFPKTPFGSPVSESLSKWTHLTEFELKGLKALVEKLEALP
ENKKGVPDGIKDPQALLEDMKVVLKEHEDDDPKMAATGVPVVFWPKKSAKVRMHQQRPPN
RPKPKMAASSPAAAVKLSASRSTSGARRRRTRCRKCEACLRTECGECHFCKDMKKFGGPG
RMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEEDKFNRMLMECSICNEIVHPLCL
KVKDSGGVVNDELPNCWECPKCNHSGKTGKAVKQKRGPGFKYASNLPGSLLKDSRLNRDI
KEEPDPPSLPTSPTGTTATVATVKRKAERDDTPKTKAEESPPLKKRSPMLSLGGLPRPRP
EDNPLRKKRMLFDIKDEDEPPVVKKKKKPPKPDDLLIPKLLKTIKQEQVDEDDEHKDHED
EEEDRCTADRVVTKGKREEEEEDGDEEEEKGGGVEDSKDGTVKTMLSPLLRTSRARESDQ
SCSSSPRAGPSSVGCDAPEKTPGQLKARKRRRLPNKELSKELSKELNLEIQKTEDCLANQ
NRRPLKREDSPANNSRRPLKTEDTSTNPNRRPPKTEDSPANHNRRPIKTEDGLSNHNRRP
LRTEDCLVNQNHRPMKTEPESDGEEPKPKRPLNNCTSDLGDWLHPRGRELNGTPRQLSPL
GWNRSPPITPICPRPPPCRSPPKCVQMERHVIRPPPISPPPDRLPLEDGQTHMMHREVWM
AVFGHLAHRDLCVCMRVCKTWNRWCCDKRLWTRIDLNRCKSITPLMLSGIIRRQPVALDL
SWTNISKKQLSWLINRLPGLRMLLLSGCSWVAVSALCTASCPLLRTLDVQWVEGLKDAQM
RDLLSPPTDNRPGQLDNRSKLRNVVDLRLAGLDITDTSLRLLIRYTPQLTRLDLSYCNHV
TDQSVNILTTAGTTTRDSLTDINLSVCNRVTDQSLAYFKRCGSICHIDLRYCKQVTKEGC
EQFVAEMSVSVQFGLVEEKLLQKLC
NT seq 4218 nt   +upstreamnt  +downstreamnt
atggaagcgagtgcagaatctggacgcaaactgcgctccatctgccggacaatgtatgac
gaaaacgaggacttctctgacgttgaagaaattgcaaatgtcaggggtttcaatttggag
gagaaacttgttagtgactcatacaacacacatttcgttcagttgatggatggcaaagat
ttcacttatgagtatgttcagagagaggcacttcagacccctcttattttcaaagccaaa
gatggactgggaatcagaatgccagacccggagttcaccgtcagtgagattaaaggtttg
gttggtagccgtcgtgccgttgatgtgatggatgtgagcacccagaaaggctctgagatg
agcatggcccagtttgtccgctactatgagacgcctgaggaagagagggacaaactcttc
aatgttatcagcctagagttcagccacaccaaactggagaacctcatcaagaggcccact
gtggtggatttagtggactgggtggacaacatgtggcccctaaaactgaaacgaagacaa
accgaagccactaatgtcatctcagagatgaagtaccccaaagtacagaagtactgtttg
atgagcgtgaagggctgctatactgacttccacattgatttcgggggcacgtctgtgtgg
tatcacgttttcaagggagggaaggtgttctggctggtgcctccgacgcctcataacctt
gccctgtatgaggactgggttctgtcaggcaagcagagtgacatcttcctgggagaccgt
gcagatggctgccagagggtggagctgaaacagggctacaccttcttcatcccctctggc
tggattcatgcagtctacacccctgaggacacgctggtgtttggaggcaacattctgcac
agctttaacattcccatgcaactctccatctatgagatagagaataggactaaggttcat
tccaagttccgctacccattctaccatgagatgtgctggtatgtcctggagaggtacgtg
cactgcctgaccaagcgctcccatctcactccggagttccgcagagagcctctgctaatc
gacttggaaactaagctgagcacagagagcccctcctctgactcccggagtcaggacatg
gacgaggaggactcctgcgagacgcagcagggacgggatgaacagggtgacaggtcagca
tttgatgatccctgctctcctgataacaggaagggtaaatccagcggccttcgacacctc
aaagctgccttgtccaatgattctgaggacagctgcatccccacctccacccagcctcca
gagttccccaaaaccccctttggctcgccagtctcagagtctctgagtaaatggactcat
ctgactgagtttgaactgaagggcctcaaggcccttgtggagaaactggaagccctccct
gaaaataagaagggtgttccagatggcatcaaggacccccaggccctgctggaggacatg
aaggttgtcttgaaggaacatgaagatgatgaccccaaaatggctgccactggagtacct
gtggtgttctggcccaagaagtctgccaaggtgagaatgcatcagcagcggcctcccaac
agacccaaacccaaaatggcggcctcgtctcctgcggcggcggtcaagctgtcggccagc
cggagcacgtctggcgccaggaggagaaggacgcgttgtcggaagtgcgaggcttgcctg
aggacagagtgtggagaatgccacttctgtaaagacatgaagaagttcggagggccaggt
cgcatgaaacagtcctgcatcatgaggcagtgtatagcgcctgtactgccccacacagcg
gtgtgtctggtgtgtggagaggcagggaaggaggacacagtggaggaagaggaggacaag
tttaaccgcatgctcatggagtgctccatctgcaatgagatagtccatcctctctgcctc
aaggtgaaagattctggtggagttgtaaatgacgagttgccaaactgctgggagtgtcca
aaatgcaaccattcagggaagacagggaaagccgtcaagcaaaaaagaggaccagggttc
aagtacgcgtccaaccttcccgggtcgctgctgaaggactcacgattgaaccgtgacatc
aaggaagagcccgacccacccagtctgccaacatcacccactgggaccacggcaaccgtg
gccacagtgaagaggaaggcggagcgtgatgacacccccaaaacgaaagcagaggaatct
cctcctctgaagaaacgttctccaatgctgtctctgggcgggctgccccgacccaggcct
gaggacaaccctctgaggaagaagaggatgctgttcgacatcaaagatgaggacgagcct
cctgttgtcaagaaaaagaagaagcccccaaaacctgatgaccttttgatccccaagctg
ttaaagaccatcaagcaagagcaagtagatgaggacgacgaacacaaagaccatgaagat
gaagaggaggacagatgcacagcggacagggttgtaactaaagggaaaagagaagaggag
gaagaggatggagatgaggaggaggagaaaggtggtggtgtagaggacagtaaagacggt
acagtaaagactatgctgagtccactgctacggacgtctagagccagagagagtgaccag
tcctgctccagctctccccgggcagggcccagcagtgtagggtgcgatgccccagagaag
acacctggccagctgaaggcacgcaaacgccgccgcctccccaacaaagaactgagcaag
gagctgagcaaagagctcaatctggagattcagaagaccgaggactgcctggccaatcag
aaccgcagaccactgaagagggaggacagcccagccaataacagccgtcgacccttgaaa
actgaggacacctcgaccaatccgaaccgcagaccaccaaaaacagaggactctcctgcc
aatcataaccgcaggccaattaagactgaggatggtctatccaatcacaaccgccggcca
ttgaggaccgaggactgcttagtcaatcagaaccacaggccaatgaagacagagcctgag
agcgacggggaggagcctaagcccaagcggccactcaacaactgcaccagtgacctcgga
gactggctccaccccagggggcgggaattaaacgggacgccccgccagctctcgcccctg
gggtggaatcgcagccctccgatcacacctatttgcccacgccctcctccctgccgctca
ccacccaagtgtgtccagatggagcgtcacgtgatccggccgcctcccatcagccccccg
ccagacagactgcccctggaagacggacagacccacatgatgcacagggaggtgtggatg
gccgtgttcgggcacctcgcacacagagacctttgtgtctgcatgcgcgtctgcaaaacc
tggaacagatggtgctgtgataagaggctgtggacgcggatcgatctgaaccgctgtaag
tccatcactcccctcatgctgagtggcatcatccgcagacagcctgtggctctggacctc
agctggaccaacatctccaagaagcagctcagctggctcatcaacaggctgccaggtctg
cggatgctgctgctctcaggctgctcctgggtggctgtgtctgccctctgcaccgccagc
tgcccgttgctgaggaccctagatgtccagtgggtagaggggctcaaagacgcccagatg
agggacctactctcaccccccacagacaacaggccaggtcagctggacaacaggagtaag
ttgcggaatgtggtggacctgcgtctggccgggctggacatcacagacacctccctgcgc
ctcctcatccgctacacgccccagctgaccaggctggacttgagctactgcaaccacgtc
actgaccagtcggtcaacatcctgaccacggctgggaccaccaccagagactcgctcact
gacatcaacctctctgtgtgcaacagagtcacggaccagtcgctggcctacttcaagcgc
tgtggaagcatctgtcacattgacttgcgctactgcaagcaggtgaccaaggagggctgt
gagcagttcgttgctgagatgtcagtgagtgtacagttcggacttgtagaggagaaacta
ctgcagaaactctgctag

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