KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112221946
Entry
112221946         CDS       T05605                                 
Name
(RefSeq) microphthalmia-associated transcription factor isoform X1
  KO
K09455  microphthalmia-associated transcription factor
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04137  Mitophagy - animal
otw04916  Melanogenesis
Brite
KEGG Orthology (KO) [BR:otw00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    112221946
 09150 Organismal Systems
  09152 Endocrine system
   04916 Melanogenesis
    112221946
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:otw03000]
    112221946
Transcription factors [BR:otw03000]
 Eukaryotic type
  Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
   Ubiquitous bHLH-ZIP factors
    112221946
SSDB
Motif
Pfam: MITF_TFEB_C_3_N DUF3371 HLH
Other DBs
NCBI-GeneID: 112221946
NCBI-ProteinID: XP_024240177
Position
LG22:16538907..16583279
AA seq 514 aa
MQAESGIVPDFEVGEEFQEEPKTYYELKSQPLKKNSNPSDQPCSSSKPPLGSSTTTSRIL
LRQQLMREQLQEQERREQQRRQASSTSQYPKITAAHNRTHGQTPAINVSAPPSLPPASQL
PMEVLKVQTHLENPTKYHIQQAQQQQVKRYLGKIGSLPCPNQPADHGGMPPGQGNSAPNS
PMALLTLNINCEKEMDDVIDDIISLESSYNDDILGLMDPQLQMANTITVNTNLLDLYGNQ
GMPPPGLAINSCPAILPNIKREYSVSQSPAVMHMDKSESFGKFDNYQRPEGYPVEAEVRA
MAKERQKKDNHNLIERRRRFNINDRIKELGTMIPKSSDPDMRWNKGTILKASVDYIRKLQ
REQQGAKELENRQKKLEHINRHLMMRIQELEMQARAHGLTTDSSALCSAELSARGIKQEP
ALGDFHQDLYPVDPQHQHHPACTPDQVQSTTLELNDEACPYTEGHGGISGELRMDDTLSP
VGGGDPLLSSVSPGASKDSSCSGSISMEENDHGC
NT seq 1545 nt   +upstreamnt  +downstreamnt
atgcaagcagaatccggaatagttcctgacttcgaggttggagaagagtttcaagaggaa
ccaaaaacgtattacgaattgaagagtcagcccttgaaaaaaaacagtaatccttcagac
cagccatgctcatcttccaagcccccattgggctcctcgaccacaacatcacggatcctg
ctgcggcagcagttgatgcgagagcagctccaggagcaggagcggcgggagcagcagaga
cgccaggcctcctccacctcacagtaccccaagatcaccgccgcccacaatcgcacgcac
ggccagacaccggccatcaatgtcagcgctcctcccagcctgccccccgcatcccagctg
cccatggaggtgctgaaggtgcaaactcacctggagaaccccaccaagtaccacattcag
caggcccagcagcagcaggtgaagcgctacctgggcaagattggctccctgccctgccct
aaccagcccgctgaccacgggggcatgcctccggggcagggcaacagtgcccccaacagc
cccatggccttactcaccctcaacatcaactgcgagaaagagatggatgatgtcattgat
gacataattagtctggaatctagttataacgatgatatccttggattaatggacccgcag
cttcagatggccaatacgatcactgtcaacactaacctcttggatctgtatggtaaccag
ggcatgccccctccaggactggccatcaactcctgccccgccatcttgcccaacatcaaa
agggaatactcagtttcccaatctccggccgttatgcacatggacaagtcagaatcattt
ggcaagtttgacaactatcagaggcctgaagggtatcctgtagaagcagaggtcagggca
atggcaaaggaaagacagaagaaggataaccataatttgattgagagaagacggaggttt
aacatcaatgaccggatcaaagaactgggaaccatgattccaaaatcaagtgatccggat
atgcgttggaacaaaggcaccattctcaaggcgtcggtggattacatcaggaagctacag
cgggagcaacagggggccaaagagctggagaacaggcagaagaagctggagcacatcaat
agacacctgatgatgcggatacaggagttggagatgcaggctcgtgcccatggtctgacc
acagactcgtctgccctctgctcagcggagctctcagcccggggcatcaaacaggagcca
gccctgggagatttccaccaggatctgtaccctgtcgacccccagcaccaacaccaccca
gcctgcactccagaccaggttcagtccaccaccttggagctcaatgatgaagcctgtccc
tacaccgagggccacgggggaatctcaggcgagctccggatggacgacaccttgtccccg
gtgggagggggagaccccctgctctcctctgtctcgcccggagcctctaaggacagcagc
tgctcaggcagcataagcatggaagagaacgaccatggctgttag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (3)   
   Pfam (3)   
All databases (20)   

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