KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112222201
Entry
112222201         CDS       T05605                                 
Name
(RefSeq) G/T mismatch-specific thymine DNA glycosylase isoform X1
  KO
K20813  thymine-DNA glycosylase [EC:3.2.2.29]
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:otw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    112222201
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:otw03400]
    112222201
Enzymes [BR:otw01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.29  thymine-DNA glycosylase
     112222201
DNA repair and recombination proteins [BR:otw03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     112222201
SSDB
Motif
Pfam: UDG
Other DBs
NCBI-GeneID: 112222201
NCBI-ProteinID: XP_024240654
Position
LG01:9504319..9515155
AA seq 454 aa
MEEKLYGSVPVPSEYLQQWIQSAQQLQAQQGQYPGINHHHSPHPHYTEEPSEERVMAHAH
MAVNDELMAQQEPANLAKAPAKKRGRTAQPKEPKPPKMPKPPKAKPGPKPKKGKEGQEAD
GTQEKMDETVQKVRKKRDRFKGMTEDEVMSRTLTDILDYNLDYVIIGINPGLVAAYVGRW
FPGPGNHFWKCLFLSGFTDEQLNHMSDTSLPAKYKIGFTNMVARTTPGSKDLSTKELREG
ALILVEKLKKYKPLIAVFNGKCIYEMFCREMFGKKPKKLDFGLQPHKIPDCEVALYLMPS
SSARCAQFPRAQDKVHFYIKLRELRDQLRGVARTDDIQELEYTFDLGLAKEDAKRMAIKE
EAYDPGYEAAFGGAYGEGGPGPEEGQSNGNGHCNFSSAENTVSDAVEKADTSQLPAAAAT
EGQLPDGQWMMQSFADQIPDIGGSKEPQAWAGNV
NT seq 1365 nt   +upstreamnt  +downstreamnt
atggaagaaaagctgtatggatcagtgcctgtcccctcggaatatcttcaacagtggatt
cagtcagctcaacagcttcaggctcagcagggccagtatccgggcatcaaccatcaccac
agtcctcaccctcactacacagaggaaccaagtgaagagagagtaatggcacatgcacat
atggctgtcaatgatgagctcatggctcagcaagaacctgccaacttagcgaaagctcca
gcgaaaaagcgagggagaacggcacaaccaaaggaacccaagccacccaaaatgcccaag
ccccctaaggccaaaccgggccccaagcccaagaaaggcaaggagggtcaagaggctgac
ggcacgcaggagaagatggacgagaccgtccagaaggtcaggaagaaacgagaccgattc
aagggcatgacggaagatgaggtcatgagcagaactctgactgacatccttgactacaac
ttggactatgtcattattggaatcaacccaggtctggtggcagcctatgttggacgatgg
ttccctggccctggaaaccatttctggaagtgcctgttcttgtctggattcactgatgag
cagctcaaccacatgagtgacaccagcctgccagcgaaatataagatcggtttcaccaac
atggtggcaaggacaacgcctggaagcaaagacctttcaaccaaagagctacgtgagggt
gccttaattcttgtggaaaagctgaagaagtacaagcctctcatagctgttttcaatgga
aaatgtatctatgaaatgttctgcagagagatgtttggaaaaaagcccaagaagcttgac
tttggtctgcagccacacaagatacctgactgtgaagtggcgttgtatttgatgccgtcg
tccagtgcccgctgtgcccagttcccccgtgcccaggacaaagtgcacttctacatcaag
ctgagggaattaagggaccagctcaggggcgtggccagaacagacgacattcaggagttg
gagtacacctttgacctgggattggccaaggaggacgccaagaggatggcgattaaagag
gaggcgtacgacccgggctacgaggcggcctttggcggcgcatatggcgagggtgggccg
gggcctgaagagggccagagcaacggcaacgggcactgtaacttctcgtcggcggaaaac
acagtttcagacgctgtcgagaaggcagacacttctcaacttcctgccgccgctgccaca
gagggacaactcccggacggacagtggatgatgcagtcttttgctgatcagattccagac
attgggggctctaaagagccccaggcatgggcgggcaatgtataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (1)   
   Pfam (1)   
All databases (15)   

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