KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112222547
Entry
112222547         CDS       T05605                                 
Symbol
zgc:113232
Name
(RefSeq) collagen alpha-1(I) chain
  KO
K08131  collagen type IX alpha
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04510  Focal adhesion
otw04512  ECM-receptor interaction
otw04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:otw00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    112222547 (zgc:113232)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    112222547 (zgc:113232)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    112222547 (zgc:113232)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:otw00535]
    112222547 (zgc:113232)
Proteoglycans [BR:otw00535]
 Extracellular matrix (ECM) proteoglycans
  Others
   112222547 (zgc:113232)
SSDB
Motif
Pfam: Collagen
Other DBs
NCBI-GeneID: 112222547
NCBI-ProteinID: XP_042160328
Position
LG23:13699337..13711047
AA seq 657 aa
MGAPRVKVLVISPLLVFLLCILPSHAQDEYSGYHSGEEHTYEGSLVDNYEHSGYPQPEEY
PPEPTHSYEEQQPSSGYDPYAPAPTSVSMITEDSYPYTTTTQVPYEQEPYEESLQAPGGG
EASLGEEGPTDCNCEPGEPGFAGFAGPKGARGLQGKDGFPGAQGREGYKGFKGVLGRGGD
TGPEGDSGPDGEGGASGFSGAQGLPGLPGDPGETGVLGLKGDIGMEGPRGGVGVTGETGP
IGEAGPGGPDGTGGIKGSTGAEGKQGPEGTDGEKGQIGAPGFSGDHGEMGYNGYPGEPGG
RGETGHKGDQGPGGMPGSDGEPGEDGPLGVPGVIGFPGEFGQKGTSGDRGVRGPPGRVGA
GGPQGARGDAGIPGKPGPKGLQAQPGAKGETGPDGEKGGVGRTGVKGEKEDKGSFGARGD
KGQQGERGIIGPDGIVGRNGPPGIPGSRGEPGPGGDLGVKGGSGPKGVPGAPGPGLTDEQ
VLQLCKGVVTAQISQYAASIRVKCSQGCPINNRTLIGPPGTRGPTGESGKPGKAGKAGVK
GGRGIQGDTGVDGQKGTVGERGTKGSKGKGGEPGKGLPGHDGHQGLRGLPGHPAEPKNGL
AGHRGPRGFTGALGQPGMAGNAGVPGFCEARDCSIHAPVMRKEQGLVKGPRDLNPKI
NT seq 1974 nt   +upstreamnt  +downstreamnt
atgggagcccccagggtgaaggttttggttatctctccgctgctcgtgttcctattgtgc
atcctcccctcccacgctcaggacgagtactctggttaccactcaggtgaggaacacacc
tatgagggctcattggtcgacaactatgagcattcaggatacccacagccagaggaatac
ccaccggagcccactcacagctatgaggagcagcaaccctcatctggatatgacccctat
gcaccagcccccaccagtgtgagcatgatcacagaggactcctacccctacaccaccacc
acacaggtaccatacgagcaggagccctacgaagagtcgctccaggcccctggtggtggg
gaggcttctctgggggaggaggggccaacagactgtaactgtgagcctggagagccaggg
ttcgctggatttgcagggcccaagggagccagaggactgcaaggtaaagatggcttccct
ggggctcagggacgggaggggtacaaaggattcaaaggagttctaggaagaggaggagac
acagggcctgagggtgactccgggcctgatggggagggcggtgcctctggtttctctgga
gcccagggcttgcctggtcttcctggagatccaggtgagacaggggtgctaggactgaag
ggtgacatcggtatggaggggccacgcggaggagtgggggtaacgggtgagactggtcca
attggtgaggcagggcctggtgggcctgatggaactggaggtatcaagggatcaactgga
gcagaagggaaacagggtcctgagggaacagacggggaaaagggtcagattggagcacct
ggattctcaggagaccatggggagatgggctataatgggtatcctggagagccgggaggc
agaggagagaccggtcacaagggtgaccaaggcccagggggcatgccaggcagtgatggg
gagcctggagaggatggtcctcttggagttcctggggtgatcggctttcctggagagttt
ggacaaaagggcacgagcggggatcgtggtgtgaggggacctcctgggagagtaggagct
ggggggcctcaaggagcgagaggagatgcaggaattccagggaaaccaggacctaaaggc
ctgcaggcccagcctggagccaaaggggagacaggacctgatggtgagaagggtggggtt
ggaagaactggtgtgaagggagagaaagaggacaagggaagttttggagcacgtggtgac
aaaggacagcaaggggagagaggtatcatcggccctgatggcattgttggacgaaatgga
ccccctggcatcccaggctccagaggagagccaggtccaggcggtgacctgggcgtcaaa
ggtggctctggacctaaaggagtgccaggtgcccctggccctgggctgacagatgagcag
gtattgcagctgtgtaaaggagtggtgacagcccagatctcccagtatgcagcttccatc
cgggtcaagtgttcccagggctgccccatcaacaaccgcacacttattgggccgcccgga
accaggggaccaactggagaatcaggcaaacccggtaaagcgggcaaagctggagtcaaa
ggaggcaggggcatccaaggggacacaggagtagatggtcagaaggggacagtgggtgaa
agaggaacaaaaggctcgaaaggaaagggcggtgagcctggtaaaggtctgccaggacac
gatgggcatcaaggcctcagagggctgccaggccacccagcagagccaaagaatggtttg
gcaggtcacagagggccccgtggtttcacaggtgctttgggccagcctggcatggcaggc
aacgcaggagtgcccggcttctgtgaggcacgggactgcagcattcacgcgcctgtgatg
cgcaaggagcagggcctagtgaagggaccccgcgatctaaaccccaagatttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (13)   

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