KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112230880
Entry
112230880         CDS       T05605                                 
Name
(RefSeq) laminin subunit gamma-3 isoform X1
  KO
K06247  laminin, gamma 3
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04510  Focal adhesion
otw04512  ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:otw00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    112230880
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    112230880
SSDB
Motif
Pfam: Laminin_N Laminin_EGF Laminin_B JAG1-like_EGF2
Other DBs
NCBI-GeneID: 112230880
NCBI-ProteinID: XP_024252993
Position
LG33:11066348..11318862
AA seq 1629 aa
MDIPLTTPLLLALLLCSLSFVHGAMDSCYDDDEGVPSRCMPKFENAAFNHTIIASNVCGS
PPEDYCMQTSSTRSCHHCSVSDMGLSHNASLLTDFHTDEEPTWWQSQSMFYRVQHPNSVN
LTLRLGKAFEITYVRLKFYTSRPESFAIYKRTNQDGPWVPYQYYSASCSKTYGKNAKGYI
RPGDDERMALCTDEFSDISPLTGGNVAFSTLEGRPSAYNFDQSAVLQEWVTATDLLISLD
RLNTFGDEFFKDAKVLRSYFYAISDFSVGARCKCNGHGSECVLDEQGALVCDCQHHTAGV
DCQKCHPFYQDRPWARATGDSANQCMKCNCSGRADACVFDAEQYRSTGSGGRCVDCRDHT
DGPHCERCKENHYRRSPRDLCRPCDCNTIGSVSLQCGAEGMCTCRPSVMGEKCDTCQRGF
HSLSPGGCRSCDCETRGSVGICSTLDGSCHCKDNVEGQACDRCKPGSFNLQENNPAGCTS
CFCFGHSLACRSSNDHAAVNITSDFLEDPDRWSGQFSGGQEYPLLWKEGEVYLLPLSEDD
LGFYRAPEKFLGNHLLSYGQLLSLTFTAEAQCLLPHSVTVLLEGSGITLSADLLPQPGLV
HQPGLAPQHTFTLRLHKEETRLRPFLSAFEFQSLLFNLTAFRISNAGGHNYTSQLSGVTL
ASAAHSSSPVTSSTPPAPWVEVCTCPPGFGGQFCELCAPGYTREVPNRGPLSPCVPCTCH
QHGPCHPETGVCKCADFTTGPTCEHCLDGYYGNALIGTTNDCQTCPCPDRTSCAQIMEIG
DVVCTNCPSGQRGTRCELCEDGFHGDPLGRSGLVRQCERCDCNGNVDPNALGVCDHMTGR
CFKCLGHTEGDHCQRCRRGYYGDAMDRTMAGKCKPCDCSPAGTSGLLEDCDPQTGSCQCL
SHVTGRDCGQCSVGFFNLQHGVGCERCNCNPIGSSSAGCHPITGQCVCQPGLEGRLCSTC
RMGFFGFSSRGCRACNCDPMGSRSMQCHTNGTCPCRQGFVGYKCDQCELNYFHNRATHQC
EECPVCYGLVKEEAGKLKARLQDLEKLLARFDCRNGSGRQHHVREYHVRQHHERGHQGED
SLPNALEDFLAIQEAKEAFVKQFALLETSTHTLSAQLHTVATAMNCSASMEEEQEEGWRT
LCRTLADSVSVVRSAQTQLMQATLDLDNMVIPFKMTPVPNRWNSAVNESEILMKSHTEMA
GHIESIATKAFMASNQTYSLLMDLLEDNSIEEYISNLTEQMADMQQMKENLTAQVNETLA
IQLSLEEESAEIMVAFVNLTSSILELSKKMPNPTSGTNQSDPSLRSGANQTEGVELSNRT
SELAFHVQSKEELASKIREEMEPRIQTAHKNLAAVQDMHKLTVQAQGSKVIALSSVVTGK
EVESKAITLRRELEDMQREWPQRQAQTKAALKRERLLREKVLEDVSKKVNQTKRVLRPAL
ESATLSNATAQEAKHTANALSKEAKATLTQGKHTRTLSAQLSSSVDITLQQLEEQENHTV
QAQTQTNAEPVESLASVKVNIQAAQLQLEAYSLTLTQLVNKIDGGMALERFEHILSETAV
RLSVLRGSVESPALNGKIQTLQSAAQDQNSQLTHLEQDLQEIRQERDSLKDIALHLPQTC
PQASGIEGH
NT seq 4890 nt   +upstreamnt  +downstreamnt
atggatatcccactgaccaccccactcctcctcgccctccttctctgctccctctccttc
gttcacggggccatggactcctgctacgatgacgacgagggtgtccctagccgttgcatg
cccaagttcgagaacgcagcctttaaccacacgatcattgcttccaatgtgtgcggttca
ccgccagaggattactgcatgcagacgagctcgacgcgctcctgccaccactgtagtgtg
tcggacatgggcctcagccacaacgccagcctgctgacggacttccacacggacgaggaa
cccacctggtggcagagccagtccatgttctacagagtccagcaccctaactctgttaat
ctcaccctgcgcctcggtaaggcctttgagatcacctacgtgcggctcaagttctacacc
agccgaccagagagctttgccatctacaagcggacaaatcaggatggaccatgggtgccc
taccagtactacagcgcctcctgtagcaagacctacgggaagaacgccaagggatatatc
cgcccgggtgacgacgagaggatggcattgtgcacagacgagttcagtgacatctcccct
ttgaccgggggaaacgtggccttctctactttggagggacgacccagcgcatataacttt
gaccagagcgccgtgctgcaggagtgggtgacagccaccgacctgctgatctctctggac
aggctcaacactttcggagacgagttcttcaaggacgccaaggtgctgcgatcctacttc
tacgccatctctgatttctctgtgggagccaggtgtaagtgtaatggccatggcagtgag
tgtgtgttggatgagcagggggctctggtgtgtgactgccagcatcacacggccggggtg
gactgccagaagtgtcacccgttctaccaggacaggccatgggccagggccaccggagac
tctgccaaccagtgtatgaagtgtaactgcagtgggcgagcggatgcatgtgtgttcgat
gcggagcagtaccgtagcacagggagtggggggcgctgtgtggactgtagggaccacact
gacggaccgcactgtgaacgctgcaaagagaaccactaccgacggtcaccacgggacctc
tgccgcccctgcgactgtaacaccataggttctgtgagtctgcagtgtggtgcagagggg
atgtgtacgtgcagacccagtgtgatgggggagaagtgtgatacctgtcaacgcggcttc
cactcgctcagccctggtggctgcaggtcgtgtgactgtgaaaccaggggcagtgttggc
atctgctctacgctggacggcagttgtcactgcaaggacaacgtggagggacaggcgtgt
gacaggtgcaagccaggctccttcaacctgcaggagaacaacccagctggctgcacctca
tgtttctgcttcggacactcattggcctgcagatcctccaatgaccatgcagctgtcaac
atcacttctgacttccttgaagacccagaccgctggtctggacagttctctgggggacag
gagtaccctctgctgtggaaggaaggtgaggtctacctgctaccactcagtgaggatgac
ctgggcttctacagagctccagagaagttcctggggaaccatctcctgagctatggccag
ctcctctccctgaccttcacggccgaggcccagtgcctcctccctcacagtgtcactgtg
cttctggaaggatctggaatcaccctgtcagctgaccttttaccccaacctggacttgtc
caccagccaggcctcgctccccagcacaccttcactctcagacttcacaaggaggagaca
agactgaggccttttctgtctgccttcgagttccaaagtcttctcttcaacctcactgca
ttcaggatcagcaacgcaggaggacacaactacacgtcccaactctcaggggtaaccctg
gcctccgctgcccactcctccagccctgttacatcctctaccccccctgctccctgggtt
gaggtgtgtacgtgccccccggggtttgggggtcagttctgtgagctctgtgccccaggc
tacaccagagaggtccctaacagaggacccctgtcaccctgtgtgccctgcacctgccac
cagcacggaccctgccaccctgagacaggtgtgtgtaagtgtgcagatttcaccacagga
ccaacctgcgagcactgcctggatggttactatggcaacgcgttgattggcacgaccaac
gactgtcaaacttgcccctgcccggaccgcaccagctgtgctcaaattatggagattggg
gacgtggtctgtaccaactgcccttcaggacagaggggaaccaggtgtgagttgtgtgag
gacggtttccacggcgaccccctgggccgttctgggctggttcggcagtgcgagcggtgc
gactgtaacggtaacgtggaccccaacgcgctgggcgtgtgtgatcacatgacgggccgc
tgcttcaagtgtctgggacacaccgagggagaccactgtcaacgttgtcgacgcggttac
tatggagatgccatggaccggacgatggccgggaagtgcaaaccctgcgactgcagtcct
gcagggacttctgggttgttggaggactgcgacccccagactggaagttgtcagtgcctt
agtcatgtgaccgggcgagactgtggccagtgctcagtcggcttcttcaacctgcagcat
ggagtaggctgtgagaggtgcaactgtaaccccattggctcgtcttccgcggggtgccac
ccaatcacagggcagtgtgtgtgtcagccgggactggaggggcggctgtgcagcacctgt
cgtatgggcttctttggtttctcctcacgaggctgcagagcctgtaactgcgaccctatg
ggttcccgctccatgcagtgccacaccaacggcacctgtccctgccgccagggcttcgtg
gggtacaagtgtgaccagtgtgagctcaactacttccacaacagagccacgcaccagtgt
gaagagtgccccgtctgctacgggctagtcaaggaggaggcagggaagctgaaggcacgg
ctgcaggatttggagaagctcctggcacgcttcgactgccggaatggctccggacgccag
catcacgtgcgcgagtatcacgtgcgccagcatcacgagcgtggccatcagggggaggac
agcctgcccaatgcgctggaggacttcctggctatccaagaggcaaaagaagcctttgtc
aaacagtttgctctcctggagacgtctacacacactctctcagctcagctgcacactgtt
gccaccgctatgaactgtagcgccagcatggaggaagagcaggaggaagggtggagaaca
ttgtgcaggacccttgctgactctgtgtctgtggttagaagtgcacagacccagctgatg
caggcaactctggacctggacaacatggtcatccctttcaagatgacacctgtgcccaac
cgctggaactctgcggtgaacgaatcagagatacttatgaaaagtcacacagagatggct
ggtcatatagagtctatagcgaccaaagctttcatggcctccaaccagacctactctctc
ctgatggacctactggaggacaactctattgaggaatacatcagcaacctcacggagcaa
atggcagacatgcagcagatgaaggagaatttgacggcccaggtgaatgaaactctagcc
attcagctgtctctggaggaggagtctgctgagatcatggttgcctttgttaacctcaca
tcctccatattggagctgtccaaaaagatgcccaaccccacatcaggaaccaaccaatca
gaccccagcctaagatcgggtgccaaccaaacagagggtgttgagctgagcaacaggaca
tctgagctggcgttccatgtccagtctaaagaagaactggccagtaagatcagagaggag
atggagcctcgaatacagaccgcccacaagaaccttgctgccgtacaggacatgcacaag
ctgacagttcaagcccaggggtcaaaggtcattgccctgtcatcggtggtgacagggaag
gaagtggagtcaaaggccattaccctgcggagagaactagaagacatgcagagagagtgg
cctcaaaggcaggcccagacgaaggctgctctgaagagggagaggctgctgagggagaag
gttctggaagacgtcagtaagaaggtgaaccagaccaagcgagtccttaggcctgccttg
gagagcgctaccctctccaacgctaccgctcaagaagcaaaacacaccgcaaatgctctg
tctaaagaggccaaggccaccctaacccagggcaagcacacgaggacattgtctgcccag
ctcagctcatctgtagacataaccctgcagcagctggaggagcaggagaaccacactgtt
caggcacaaacccagacaaacgcagagcctgtagagtctctggccagtgtaaaggtgaac
atccaggcagctcagcttcagcttgaggcctactccctcacactcacccagctcgtcaat
aaaatagatgggggcatggcgctggaacggtttgaacatatactgagtgagacggcggtg
cggttgagtgttctgcgtggcagcgtggagagcccggccctgaacgggaagatccagacc
ctgcaatcagccgcccaggaccagaacagccagctgacccacctggaacaggacctgcag
gagatcagacaggagagagacagtctgaaggacattgccctgcacctgccccagacctgc
cctcaggcctcggggatagagggacactag

  All links  
Ontology (1)   
   KEGG BRITE (1)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (4)   
   Pfam (4)   
All databases (16)   

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