KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112233998
Entry
112233998         CDS       T05605                                 
Symbol
arid1ab
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform X1
  KO
K11653  AT-rich interactive domain-containing protein 1
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03082  ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:otw00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    112233998 (arid1ab)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:otw03000]
    112233998 (arid1ab)
   03021 Transcription machinery [BR:otw03021]
    112233998 (arid1ab)
   03036 Chromosome and associated proteins [BR:otw03036]
    112233998 (arid1ab)
Transcription factors [BR:otw03000]
 Eukaryotic type
  Helix-turn-helix
   ARID
    112233998 (arid1ab)
Transcription machinery [BR:otw03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     112233998 (arid1ab)
Chromosome and associated proteins [BR:otw03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    112233998 (arid1ab)
SSDB
Motif
Pfam: BAF250_C ARID
Other DBs
NCBI-GeneID: 112233998
NCBI-ProteinID: XP_024257731
Position
LG31:14891726..14963132
AA seq 2320 aa
MAAQVASVATLNTSPPSELKKPDRDPLEESVPGEKQHVNKEPGSDNGSPGQKDLQDGADA
GNVGGGGEPDMKNGNGNSSRVNNNNNQNDTGGPEGNNHSGMGHHHQGSFPPPPYGYNQHY
SRGPFHQHGGQQSPGMAAAAGPAVQPGNMMDPYPPNTHEHGFPNHFNNYSPFPNRTSYQG
QGYAMNSPRNNQPPAAGGQPGKQQPAGGTTAMAASYNNQRYNIGNLQPTSTPTLNQLLTS
PSSTRTYQNYPQGDYSNQEGASKGAADMASSQYGGGHPGWQQRTHHPPPMSPGNTGPGNT
GPLNRNQPPSPMDQAGKMRGQGYGGVNPYSQQQGQGQGPPPPGAQQGASYPGQGYGPPGS
QRYPMGMQGRTPGGMGGMQYGQQMAGYGQQGPGGYGQQSQGYYGQHGPPPHAGQQQSPYP
QQVHTSQGQPSAQHSQPGAPGPYPQGQGPPQVGPPQIQPPYNQGPQQQVQAVPQGQGPQP
SYPQQQGPQGQGQQPPQQQLPSQQQGPPQQQERVAPPQAQPPPGHQQPPGHQPSPGHQPP
PSHGGQQPPTGHQPSPGPQGHHPSPGHGGPPQQQGQSQQGQPSPYSQTPPLQQSPFQRFP
PPPQELSQDSFSSQSSAPPSNQPMTSTKSGAEDSMQGRPSSLPVSPPKTLTDLSGSIDDL
PTGTEGALSPGVSTSGVSSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVTPS
RSGPLSPAAVPGNQMPARPPSAHSDSIHSSMNQSAMGQDRVYMRNPQMPPYGSPQQPGSA
LSPRQSSGGQMHPGMGPYPQNNSMGNYGPQGGQYGPQGYPRQPGYSGMPNANYPGGPGGM
NPMPGQAGGAPYAGMPPGRMGPGQMGARPYGPGMGPNMGPGMPPQVTSGMCPPPGMNRKV
PGGPPDAASAMHHGGPGANSIHNRPPGYPPNMPQGMMGAGSPYGPGPGAINSMQGMLNQG
GPYGGGPMGGNMANNTPGIVPSPEFGIDVKLNPAQKMNNKVDGTPKPETKKVKKKSNSST
TTNEKITRLYELGPEPERRTWVDRYLAFTEEKATGMTNLPAVGRKPLDLFRLYVSVKEIG
GLTQVNKNKKWRELSTNLNVGTSSSAASSLKKQYIQCLYAFECKIERGEDPPPDLFIDAK
KTTQPKIQPPSPAGSGSLQGPQTPQSTSSSMAEGGDLKPPTPASTPHSQIPPMPGVRLQD
PFADGGDPAFARRNSMTPNSYQPGMGGPEMMGRMGPYEPNKDPFGGMRKAGEQFMTPALG
PNSGVEGQFNRGPPGPMVPNMQMGQRQQYPYVPGYDRRQEPGMGPDGSMGPGAPQPNLMP
SGADSGMYSPSRPPPVQRHDSYGNQYPGQGAPPGGPYPNQQPGMFPQQQPNYKRSPGDGA
YGPPAKRHEGDGMYNVPFSGQQQPGPQPPGAPPGQQDMYNQYNTGYPGSDRRPPGPQGQF
PFPFGRDRGPSSANSQSPMPPQMMGSPMQAAPDGPQCPMWQGRNEMGYPNYPNRQGPPGP
GQGPPQGYHGMNRSEEMMPGADQRINHEGQWPGHPNQRQPPYGPGGSGPPMSRPLQSNYQ
SSQNHISQVSSPAPMPRPMESRTSPSKSPYMHSGIKMQKAGPPVPASHIGQAPVQPPLIR
RDISFPPGSVEASQPILKPRGRLTMKDIGTPEAWRVMMSLKSGLLAESTWALDTINILLY
DDNSISTFNLCQLPGFLELVVEYFRRCLIEIFGILKEYEVGDPGQRMLIDPHTADEDCSD
EELPEQEDMEEDEEEEDDEEEEEERKSNTDTTTSSQQVQVKQEGVGKEEKSTTEKLTAEE
EREGGESSSSSPAPQDSSLSQEKPKQASKFDKLPIKMVRKKDPFPGCRSSKLGRRQSFDS
GLIHWSIGGGDTTEHIQTHFESRSDLLKQRKRVPPSVTESRKKVAMTVSEHPEKTKPGKE
QTTSPAEKTTKTSAPTTPAPVTATIDDVLSARPGSVTEEAVRGAAEEQKESGGQFLFSIR
QAQQSRRNITILEDEPHSKDETPLSTLSDWQDALARRCICVSNIVRSLSFIPGNDLEMSK
HPGLLLLLGRLVLLHHRHPERKQAPVTYEKEEDEGVSCERDEWWWDCLEVLRENCLVTLA
NISGQLDLSIYPESICLPLLDGLLHWAVCPSAEALDPFPMLGPHGALSPQRLVLETLSKL
SIQDNNVDLILATPPFSRLEKLYGTLVRLVGERKVAVCREMSVVLLANLAQGDSMAARAI
AVQKASVGNLLGFLEDSLAATQYQQSQSSLMHLQGAHFEPTSVDMMRRAARALHAMAKVE
ENHSEFTLYESRLLDISVSPLMNSLVSHVICDVLFLIGQS
NT seq 6963 nt   +upstreamnt  +downstreamnt
atggccgcgcaggtcgctagcgtcgccactctcaacactagcccgccatccgaacttaaa
aagccggatcgggacccactggaggagtcggtaccgggagagaaacaacatgtaaataag
gaaccgggatctgacaacggatctcctggacagaaggatctgcaggacggggccgatgct
ggaaatgtagggggaggaggggagcctgacatgaagaacgggaacgggaattcgtccagg
gtgaataataataacaaccagaatgatactgggggaccggaggggaataaccactccggg
atgggccatcaccaccagggctcattccctccacctccttacggttacaaccagcactac
agccggggcccttttcatcaacatggcggacaacaaagccctggcatggcagctgcagcg
gggccggcagtgcagccaggtaacatgatggacccatacccgcccaacacacacgagcac
ggcttccccaaccattttaacaactacagccccttcccgaaccggacttcgtatcagggc
caaggatacgccatgaattccccgcgtaataaccagcccccggcggctggggggcagcca
ggcaagcaacagccagcaggcggaactacagctatggctgcctcgtacaataatcagagg
tataacataggaaacctacaacccacgtctaccccgactttaaatcagcttctaacgtct
cccagctcaacgaggacctaccagaattacccacaaggagactatagtaaccaggaaggg
gctagcaagggagcagcagatatggccagcagtcagtatggtgggggccatccgggttgg
caacaaaggacccaccacccgcctccaatgagcccagggaacacgggacctgggaacacg
ggacctctgaacagaaaccagccccccagccctatggaccaggcagggaagatgagaggc
caggggtatggtggagtcaacccctactctcagcagcaaggccaggggcagggccctcct
cctccaggggctcaacagggtgcctcctacccaggccagggctacggacccccagggtct
cagagataccccatgggcatgcagggacgcacccccggcggcatgggtggcatgcaatac
ggacaacagatggccggctatgggcagcagggtccagggggctacggtcagcagagccag
ggctactacggccagcatggccccccaccacacgctggtcagcagcagtccccctacccc
cagcaggtccacacctcccagggtcagccctcagcccaacacagccagcctggggccccc
ggcccctatccccagggccaaggccctccgcaggtgggtccaccacagatccagccgccc
tacaaccagggaccgcagcagcaggtccaggccgtgcctcagggtcagggcccccagccc
agctaccctcagcagcaaggaccccaagggcaaggacagcagcctccacagcagcagctc
ccctcgcagcagcaaggacccccccagcagcaagaaagggtggcccctccacaggcccag
ccacccccgggccatcaacaacccccaggccaccagccctctccaggccaccagccaccc
cctagccatggtgggcagcagccacccacaggccatcagccctccccaggcccccagggc
caccacccctctccaggtcacggtggacccccccagcagcagggtcagtctcagcagggc
cagccctcaccctactcccagaccccacccctgcagcagtcacccttccagcggtttcca
cctccaccgcaggagctctcccaggactcgttcagctcccagtccagtgctcccccctcc
aaccagcccatgacttccacaaagagtggagcagaggacagcatgcagggacggccttct
agcttaccggtgagccctcccaagacattaacggacctctctggttctatagatgacctg
ccgactggtacggagggggctctgagtccgggcgtcagcacgtcgggggtgtccagtagc
cagggtgaacagagtaaccccgcccagtcacccttctcacctcacacctcgccccacttg
cctggcatccgcgggccctccccctcccccgtgggctcccctgccagcgtcaccccctcc
cgctctggacccctctcgcctgctgccgtgccaggtaaccagatgcctgcccggccaccc
agcgcccattcagacagcatccactcatccatgaaccagtcagccatgggccaggacagg
gtgtacatgcgtaacccccagatgcctccgtacgggtcgccgcagcaacctggctccgcc
ttatccccccgccagtcgtcgggaggccagatgcatcctgggatggggccctaccctcag
aacaactccatggggaactacggccctcagggtggacagtacggaccacaaggctacccc
agacagcctggctacagtggcatgcccaacgccaactatcctggaggtccaggaggcatg
aaccctatgccaggccaggctggtggtgcgccgtacgctggcatgccccccggcaggatg
ggtccaggtcagatgggtgctcgcccctacggccctgggatgggccccaatatgggccct
ggcatgcccccacaggtgacctctgggatgtgtccccctccaggcatgaacaggaaggtc
cccgggggccctccggatgcagcctccgccatgcaccacggtggccccggagctaactct
atacataacaggcctccaggctacccccccaacatgccccaggggatgatgggagcaggg
tctccgtacggcccggggccgggggccatcaacagcatgcagggcatgttgaaccaagga
ggaccctatggaggagggcccatgggagggaacatggccaacaacacacccggcattgtt
cctagccctgagtttggcatcgatgtcaaactgaacccagcccagaagatgaacaacaag
gtggacggcacgcccaaacctgaaaccaagaaggtaaagaagaagtcaaactcttcgacg
acgaccaatgagaagataactcgtctgtatgagctgggtccggagccggagaggaggacg
tgggtagaccggtatctggcgttcactgaggagaaggccacgggcatgaccaaccttccc
gccgtgggacgcaaacccctggacctcttcagactttacgtctcggtcaaagagatagga
ggcctcacacaggtgaacaagaataagaagtggagggagttgtccaccaacctgaacgtg
ggcacgtccagcagcgctgccagctctctgaagaagcagtacatccagtgtctgtacgcc
ttcgagtgcaagatcgaacgtggcgaggacccgcccccagatctcttcatcgacgccaaa
aagaccacccagcccaagatccagccccccagcccagctgggtctggatctctgcagggc
ccccagaccccccagtccaccagtagttccatggcggaggggggggacctgaagcccccc
accccagcctccacccctcacagccagataccccccatgccaggagtcaggctgcaggac
ccgtttgcagatgggggcgacccggcgtttgccagacggaactctatgacccctaacagc
taccagcctgggatgggtggtccggagatgatggggcgcatggggccctatgaacccaac
aaggacccctttggtggtatgaggaaagctggagagcaattcatgactccagcgttgggg
cctaacagtggtgtggaggggcagttcaacagaggccccccagggcccatggtccccaac
atgcagatgggtcagagacaacagtacccctatgtacctggatatgacaggagacaggaa
ccagggatgggtcctgacggcagtatgggtcctggagccccccagcccaacctgatgcct
tcaggggccgattcagggatgtactcccccagccgacccccaccggtgcaacggcatgat
tcctatggtaatcagtatcctggccaaggagcgccacctggtggcccctaccccaatcag
cagccaggaatgtttccacagcaacaaccgaactataagcggtctccaggcgacggggcc
tacggtcccccagcgaagcgtcacgagggggatgggatgtacaatgtccccttcagcggt
cagcagcagccagggccccagccccctggggcccccccgggccaacaggacatgtacaat
cagtacaacacaggttaccccggctccgaccgccgaccacctggcccccagggccagttc
cccttccccttcggccgagaccgggggccctctagcgcaaactcccagtcccccatgcct
ccccaaatgatgggcagcccaatgcaggcggcccctgacggccctcagtgccccatgtgg
cagggacgcaacgagatgggctaccccaactaccccaaccgccaggggcctccgggacct
ggccaggggcccccccaggggtaccacggcatgaaccggtctgaggagatgatgccaggg
gcagaccagcggattaaccacgagggccagtggccgggacaccccaaccagagacaaccc
ccctacggaccggggggctcgggtccccccatgtccagacctctgcagtccaactatcag
agctcccagaaccacatatcccaggtgtccagtcctgcccccatgccccgccccatggag
agccggacgtccccctccaagtcgccctacatgcactccggcatcaagatgcagaaggcg
gggccccccgtgcctgcttcccacataggccaggcccctgtgcagccccctctcatcagg
cgggacatatccttccccccagggtcggtggaggcctcccaacccatcctcaaacccaga
ggaagactcaccatgaaagacatcggcaccccagaggcctggagagtgatgatgtcactg
aagtcaggcttactagctgagagcacttgggccttggacaccattaatattctactgtat
gatgacaacagcatttctactttcaacctctgccagctgcctgggttcctggagctggta
gtggagtatttcagacgctgcctcatcgagatctttggcatcctgaaggagtatgaggtg
ggagaccctggccagaggatgctcatcgacccgcatactgccgacgaagactgctctgat
gaagagctacctgagcaggaggacatggaggaggacgaggaagaagaggatgacgaagag
gaggaggaggagaggaaaagcaacacagacaccaccacctcgtcgcagcaggtccaggtg
aaacaggagggggtggggaaagaggagaaatccacaacggagaagttgacagcagaggag
gaaagggaaggaggagagtcttcttcctcctccccagcccctcaggactctagcctctcc
caggagaaacccaaacaggccagtaagtttgacaagctgcccatcaagatggtgcgtaag
aaagaccccttccccggttgccgttccagtaaactaggccggcggcagagctttgacagt
ggactgatccactggagtatcggcgggggggacaccacggaacacatccagacccacttc
gagagccggtccgacctcctcaagcagcggaaacgggtgccgccgtcagtcaccgagagc
aggaagaaggttgccatgactgtgtcagaacaccctgagaagaccaagcctggcaaggag
cagaccacctcccctgcagagaagaccaccaagacctccgccccaaccacacctgccccg
gtcaccgccaccattgacgacgtgctgtcggcccggccgggctcggtgacggaggaggcg
gtgcgaggagcagccgaggagcagaaggagagcgggggacagttcctgttctccatccgc
caggcgcagcagagccgacgcaacatcaccatcctggaggacgagcctcacagcaaggac
gagaccccactgagcacgctgtcggactggcaggatgccctggctcgccgctgcatctgc
gtctccaacattgttcgatcgctctccttcatccccggcaacgacctggagatgtccaaa
cacccagggctgctgctgctgctgggccgtctggtcttgctccaccaccgtcacccagag
aggaaacaggcccccgtcacctacgagaaggaggaggacgagggggtgagctgtgagagg
gacgaatggtggtgggactgtctggaggtcctcagggagaactgcctggtcactctggct
aacatctccggccagctggacctgtccatctacccagagagcatctgtctgcccctgctg
gatggcctgctccactgggctgtttgtccctcagccgaggccttggaccccttccccatg
ctggggccccacggggccctatccccccagagactggtgctggagaccctcagcaagctg
agcatccaggacaacaacgtggaccttatcctggccacgcctccattcagccggctggag
aagctgtacgggacgctggtgcgtctggtcggggagaggaaggtggctgtctgcagggag
atgtctgtggtcttactggccaacctggcccagggagacagcatggcggccagggccatc
gccgtgcagaaggccagtgttggtaacctcctgggcttcctggaggacagtctagcagcc
acgcagtaccagcagagccagagttccctgatgcacctacagggggctcactttgagccc
actagtgtagacatgatgcggcgagcggcccgcgccctgcacgccatggctaaggtggag
gagaaccactcagagttcaccctgtacgagtcccgcctactggacatctctgtctcacca
ctcatgaactctctggtgtcccatgtgatctgtgacgtactctttctgattggccagtca
tga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (2)   
   Pfam (2)   
All databases (20)   

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