KEGG T05605: 112234450

Oncorhynchus tshawytscha (Chinook salmon): 112234450

Entry

112234450         CDS       T05605

Symbol

si:ch211-196i2.1

Name

(RefSeq) collagen alpha-1(I) chain isoform X1

K19721

collagen type V/XI/XXIV/XXVII, alpha

Organism

otw Oncorhynchus tshawytscha (Chinook salmon)

Pathway

otw04820

Cytoskeleton in muscle cells

Brite

KEGG Orthology (KO) [BR:otw00001]
09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    112234450 (si:ch211-196i2.1)
09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:otw00536]
    112234450 (si:ch211-196i2.1)
Glycosaminoglycan binding proteins [BR:otw00536]
Heparan sulfate / Heparin
  Extracellular matrix molecules
   112234450 (si:ch211-196i2.1)

SSDB

Motif

Pfam:

Collagen COLFI Laminin_G_3 Laminin_G_2 Laminin_G_1

Other DBs

NCBI-GeneID:

112234450

NCBI-ProteinID:

XP_024258356

Position

LG33:17995107..18144282

AA seq 1836 aa
MLFWVVKWTCCLLVLFKISAASVDAGRTDSPGESGSGMLPTEEVNLLEELSLQVSNSSNA
SMSLDAKRCPVLQVGQYSTLALPLAELFTDGFADEFSLLVQLRSPQLDEHSVLTLLSHDS
HILLQLRISAYTLTFIGTQQRLYEFPVSSLSDDQWHHVAVSVSSARLALYVDCALVERVD
WVYQGMGITPDGLLMVGGIVEGFETPFKGQLRQLTFLMGDPDAAQHHCTLHPVQCGGAAS
KPPRSPRTDHTMEELLLSSNDLEDLLERSKDSSFLDMEVGETDVFGQTGSQRGDGTWGPH
QKGMVGRGDVFVVDEDTDLADPNLHGGHLNPQWKPSRQGPKDSHEGKPEPSSKLLDENIT
TDKKTADSGGKGIGLFPGKPSDDIIIDLDPVSSSKKPSIVKTPIKTPLDPEHPDFNLLRQ
EVEGPQTPSQTALAPTSVPPATPIEAVTEERRPTTHIPTQPDPNPDCAITVEGGPERSGT
VTIVSREGDLVLGSDGQMYRVQRGPPGRMGPPGKEGFAGLRGFKGDKGQLGSEGRAGRQG
DPGPPGPPGLPSFYLWKNTVEEWATFQQTSFYQLLSAGWPREQGPPGPAGEMGKPGPQGP
TGDPGQRGPPGVMGEMGEPGPNGVTGRAGLHGKDGANGQDGQPGTLGDPGRQGPFGYRGD
GGSKGEKGEEGLIGEKGRRGRMGEPGEKGSIGLPGRRSFVGPRGPQGVSGATGPEGLPGP
DGEAGFDGPPGTPGSMGAAGFTGSVGAQGVNGSKGELGLVGVVGPRGPQGPQGLDGESGP
PGLRGIQGQLGMSGAAGPKGDPGPMGMMGIRGELGFEGPMGPLGIPGPMGFPGITGKRGP
DGDKGDPGPKGERGVQGASGIQGPQGERGPSGPPGFIGLKGQSGTKGIEGENGETGPQGK
LGREGLKGNRGTAWRNGKPGHRGNKGRVGQRGNVGQPGQPGLPGPPGTEGPEGKPGTQGL
SGSVAIAGSKGLKGFQGIAGEPGPEGPSGPPGTPGRIGPTGIPGPLGERGFTGKEGVEGP
QGSVGTYGFPGNVGMRGTTGHMGERGETGVRGLPGPSGKPGPPGLSGPPGERGPPGPQGR
LGDLGPTGSEGLQGPPGLQGSDGGTGKPGPRGSRGPLGTQGPDGPAGTPGISGAGGLIGP
AGERGEMGMLGPPGDLGPSGLDGEQGSPGQSGLEGPPGTKGEQGDLGPCGKFGPPGQPGD
RGLQGLKGLQGSHGQIGKEGDVGPTGDAGGPGFKGEKGDVGPLGPTGRNGPWGALGENGE
KGPKGEKAHIGLMGQPGFMGEIGPAGLSGLQGIMGPRGPPGPDGPEGEKGQSGSGGTIGQ
PGRTGPPGVAGVSGVRGDPGKPGAQGPVGKVGPEGDLGHKGEPGPDGEKGEPGGSSEPGE
QGLDGLPGIRGPPALPGLEGPQGEVGAQGPEGPLGVLGVRGSQGPEGQQGLKGEKGDDGR
DGSPGKTGHIGRRGKRGKPGIRGARGERGPKGKRGNVGLIGPPGWPGSIGIPGSRGDGGH
QGDKGSKGEKGDIGPLGPPGGDGLKGSQGPVGVPGQTGPKGDQGHIGPSGPRGTPGMPGL
PGLFGEKGLKGFEGYPGQPGKRGLPGAPGLPGLPGPSVNLTLTQLKDLMYLSDKPNYPLL
QTLLDSLHQDLRLLMDPPDGSKEHPATTCLELWLCHPDYTSGMYYIDPNQGSPADALLAY
CNFSGTAAHTCLHPRDAQMPTKAWLMDSETDSSFQWLSKQEQGFQFYYPGANVVQMRFLR
LQSWRALQKITYTCHPGHRLGHTDRKVKFLTDTRRQSYLGALNDCIPGDEVDSQEPREFV
FEFEDLNLLPVRDVAVFGGGNVTREFGFTIGPVCFS

NT seq 5511 nt +upstreamnt +downstreamnt
atgttgttctgggtggtaaagtggacatgttgtctactagtgctcttcaaaatcagcgct
gcctctgttgacgctggacgcacagactctcctggcgagtcagggtcggggatgctacca
acagaggaggtgaaccttctagaagaactctcgctgcaggtgtccaacagcagcaatgcc
tccatgtctctggatgctaagaggtgtccggtgctgcaggtgggacagtactccaccctg
gccctgcccctagctgaactcttcactgacgggtttgcagatgagttcagcctattggtg
cagctgcggagccctcagctagacgaacacagtgtgctcaccctgctcagccacgacagc
cacatcctgctgcagctgcgcatcagcgcgtacacactcaccttcatcggcacgcaacag
cgcctctatgagttcccggtcagtagtctgtctgacgaccagtggcaccatgtggctgtg
agtgtgtcatccgctagactggcgctgtatgtggattgtgccctggtggagcgtgtggac
tgggtgtaccagggtatgggaatcacccctgacggtctactcatggtggggggcatcgta
gagggcttcgagacaccatttaagggccaactccgacagctaacgttcctgatgggcgac
ccagacgccgcccaacaccactgcactctccaccctgtccagtgtgggggggctgcctcc
aagcccccccgctcaccacggaccgaccacactatggaggagctcctgctgtcctcaaat
gacctggaagacctgttagagcgatccaaggattcctctttcttggatatggaggtgggg
gagactgatgtgtttgggcagactgggagtcagcgtggggacgggacatggggtccccac
cagaaaggtatggtgggacgaggagacgtctttgtggtggacgaagacacagacctggct
gatccaaatcttcacgggggacaccttaatcctcagtggaaaccgagcaggcagggccct
aaggacagccatgagggcaagcctgagccctcctccaaactcctggacgagaacatcacc
acggacaagaagacggcagactctggagggaagggcattggcctgtttcccgggaaaccc
tcggatgacatcattattgatttggatcctgtgtcttcctcgaagaagccttccattgtt
aagactccaataaagacccccctggacccggagcacccagactttaacctgttgaggcag
gaggtggaggggccccagaccccctcacagaccgccctcgcccccacctcagtgccccct
gccacccctatagaagctgtcactgaggagaggagacccaccacacacatccccacccaa
cctgacccaaaccctgactgtgctatcactgtggaaggaggaccagagcgctcaggcact
gtgaccatcgtatccagagaaggggacctggttctgggctctgatggccagatgtatagg
gtccagagagggcccccaggcagaatggggccccctggaaaggagggttttgctggcttg
cgtgggttcaaaggtgacaagggccagctggggtctgaggggcgtgcagggcgacagggg
gatccaggcccccccggcccacctggcctgccctctttctacctgtggaagaacactgtt
gaggagtgggctacttttcagcaaacctctttctaccagttgctcagcgctggctggcct
agggagcagggacccccaggaccagctggggagatggggaagccaggcccacaggggcca
acaggtgatcctggccaacgagggcctccaggagtaatgggagaaatgggtgagccgggg
ccaaatggcgtgacgggcagagcagggctccatgggaaagatggagcgaatgggcaggac
ggtcagcctgggacgctgggtgatcccgggcgacagggacccttcgggtacaggggagac
ggcggttccaagggagaaaagggggaggagggccttattggagaaaagggtcgaagaggc
cgaatgggagaaccaggcgagaagggctccattggtttaccaggccgtcggagttttgtt
ggtccacgtggacctcagggagtcagtggggccactggcccagaggggctccccggccct
gatggggaggctgggtttgatgggcctccagggactcctgggtcaatgggagccgctggt
ttcacaggctctgtcggcgctcagggagttaacggctcaaagggagagttgggccttgtt
ggagttgttggccccagaggcccgcaggggccccagggtttagatggtgagagtgggcct
ccaggtctcaggggaattcagggacagcttgggatgagtggtgccgctggtccgaaaggt
gaccctggaccaatggggatgatgggtatccggggtgagctagggttcgaggggcccatg
ggcccactgggaataccaggtccaatgggtttccctggtattactggaaaaagaggacca
gacggggataagggagaccctggaccaaagggggagagaggtgttcagggtgcttcgggt
atccaagggcctcagggagagaggggtcccagtggcccccctggctttatagggctcaaa
ggtcaatctggcactaaaggcattgagggggagaatggagaaactggccctcagggaaaa
ctgggcagagaggggctgaaggggaatagagggacagcttggcgcaacggcaagcctgga
cacagagggaacaagggtcgcgtgggtcagagagggaatgttggccagcctggtcaaccg
ggcttgccaggccctcccgggacagagggaccagaaggaaagcctggtacacagggtctc
tcaggttcggtggcaatagctggcagtaaaggcctaaagggattccagggcattgctgga
gagccaggtccagagggcccctcaggacctccgggcacacctggacggataggaccaaca
ggtatccctgggccgctgggagagaggggcttcactgggaaggaaggtgtggagggccca
cagggctcagtaggcacgtatggtttcccgggtaacgtgggaatgcgtggtacaactggt
cacatgggagagaggggagagacaggtgtgagaggcctgcctggtccttctgggaagcct
ggacctccaggtttatcaggacctcctggggagagaggccctccaggacctcagggtcgg
ctgggggatctgggacccacagggtcagagggcctacagggacccccgggtctgcagggt
tcagatggagggacagggaagccggggcccaggggaagcagagggcctctggggacacaa
ggtcctgacggaccagcaggaaccccaggaatttcaggtgctggtggactcataggacca
gcaggggaaagaggagaaatgggtatgctgggacctcctggtgatcttggtccttcggga
ctggatggggaacagggtagtcctggccaatcagggttagaggggccaccaggaacgaaa
ggggaacagggggacctagggccttgtgggaagtttggtcctccagggcagcctggagat
cgaggtctacaggggctcaaagggttgcaaggctctcatggacaaataggaaaagagggt
gatgtcggacctactggcgatgctggtggtccaggtttcaaaggggagaagggtgatgtg
ggacctctggggccaacagggcggaatggtccatggggggcgctgggggagaatggggag
aagggaccaaaaggagaaaaggcccacatcggactaatgggtcagccaggatttatggga
gaaataggacctgcaggcttgtcagggctacagggtatcatgggccccagggggcctcca
gggccagatggacctgaaggagagaagggccagtctgggtctggcggaaccatcggacaa
cctggcagaacagggcctccgggggtggctggagtctcaggggtcagaggtgatccgggg
aagccaggagcacagggtccagttgggaaggttgggcctgagggagacttgggccataaa
ggtgagccagggccagacggagaaaaaggggagccagggggatcaagcgagccaggagaa
caggggctcgacggtctgccgggcatcagagggccaccagcacttcctggtttagagggg
ccacagggtgaggtgggagcccaggggccagaaggtccccttggggtgctgggtgtcagg
ggaagccaaggacctgagggacaacagggactgaaaggagagaagggagatgacggcaga
gatggatcacctggaaagacaggtcacatcggaaggaggggcaaaagaggcaagcctgga
atcaggggcgcaagaggagagaggggaccaaaggggaaaaggggaaatgtgggattgatt
ggtcctccaggatggccagggtctataggaatcccaggctcgcgaggagacggagggcat
cagggtgacaaagggagcaagggagagaaaggggacatagggccgctcggtccgccaggg
ggtgatggcctaaagggtagtcagggtcctgttggggtgccaggacagacaggcccaaag
ggagatcaggggcatattggaccttctgggccaagaggaacacctgggatgccaggacta
cctggtttgtttggagaaaagggtttgaaaggatttgagggatatcctgggcaacctggt
aagaggggcctgccgggggcacctggactcccaggacttccaggtccttcagtgaatctg
accctcactcaactcaaggacctgatgtatctgtcagacaagcccaactaccccctgctc
cagaccctgctggactctctacaccaggacctgaggctgctgatggacccccctgacggc
agcaaggagcaccctgccaccacctgcctggagctgtggctctgccaccccgattacacc
agtgggatgtattacattgatcctaaccagggcagccctgctgatgctctcctggcctac
tgcaacttctctggtacagccgcacacacctgccttcaccccagagacgcccagatgccc
acgaaggcctggcttatggattcagagacagacagctcgttccaatggctcagcaaacag
gaacaaggatttcagttctattatccaggggccaatgtggtccagatgcggttcctgagg
ttgcagagttggagagccttgcagaagatcacctacacctgccacccgggacacagactg
ggtcacacagacagaaaggtcaagttcctgacagacacaaggagacagagttacttagga
gctcttaacgactgcattccgggagatgaggtggactcgcaggagccgcgggagtttgtg
tttgaatttgaggacctcaacttgcttcctgtgagagatgtggctgtgttcgggggcgga
aatgtcacgcgcgagtttggcttcaccatcgggcccgtgtgtttcagctag

All links

Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (5)   
   Pfam (5)   
All databases (21)   

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